| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | ConcurrentGenericReadInputStream.java | 37 long maxReads=-1; in main() local
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| /dports/biology/bbmap/bbmap/current/hiseq/ |
| H A D | PlotFlowCell.java | 534 private long maxReads=-1; field in PlotFlowCell
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | CrossContaminate.java | 442 private long maxReads=-1; field in CrossContaminate
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| H A D | KmerCoverage.java | 76 long maxReads=-1; in main() local
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| H A D | AddAdapters.java | 683 private long maxReads=-1; local
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| H A D | FindPrimers.java | 632 private long maxReads=-1; field in FindPrimers
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| H A D | SplitPairsAndSingles.java | 767 private long maxReads=-1; field in SplitPairsAndSingles
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| H A D | CalcUniqueness.java | 623 private long maxReads=-1; field in CalcUniqueness
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| H A D | KmerNormalize.java | 102 long maxReads=-1; in main() local
834 long maxReads, long tablereads, int minq, int buildStepsize, in runPass()
1138 public static long count(String in1, String in2, KCountArray kca, int k, long maxReads, in count()
1323 public static long count(String[] list1, String[] list2, KCountArray kca, int k, long maxReads, in count()
1611 …ublic static long downsample(ConcurrentReadInputStream cris, KCountArray kca, int k, long maxReads, in downsample()
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| H A D | DecontaminateByNormalization.java | 695 private long maxReads=-1; field in DecontaminateByNormalization
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| H A D | DemuxByName2.java | 936 private long maxReads=-1; local
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| /dports/biology/bbmap/bbmap/current/pacbio/ |
| H A D | MergeFastaContigs.java | 338 long maxReads=-1; in mergeFastq() local
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | CompareSSU.java | 483 private long maxReads=-1; field in CompareSSU
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| H A D | KmerLimit2.java | 921 private long maxReads=-1; field in KmerLimit2
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| /dports/biology/bbmap/bbmap/current/bloom/ |
| H A D | LargeKmerCount2.java | 309 public static long maxReads=10000000L; field in LargeKmerCount2
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| H A D | KmerCount5.java | 177 …KCountArray counts, final KCountArray trusted, final long maxReads, final int thresh, final int de… in count()
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| H A D | KmerCount6.java | 209 …KCountArray count, final KCountArray trusted, final long maxReads, final int thresh, final int det… in count()
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| /dports/biology/bbmap/bbmap/current/cluster/ |
| H A D | ReclusterByKmer.java | 559 private long maxReads=-1; field in ReclusterByKmer
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| /dports/biology/bbmap/bbmap/current/var2/ |
| H A D | ApplyVariants.java | 617 private long maxReads=-1; field in ApplyVariants
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | RenameGiToTaxid.java | 842 private long maxReads=-1; field in RenameGiToTaxid
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| /dports/biology/bbmap/bbmap/current/sort/ |
| H A D | Shuffle2.java | 698 private long maxReads=-1; field in Shuffle2
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| /dports/biology/bbmap/bbmap/current/clump/ |
| H A D | KmerSort.java | 510 long maxReads=-1; field in KmerSort
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| /dports/biology/bbmap/bbmap/current/consensus/ |
| H A D | FixScaffoldGaps.java | 719 private long maxReads=-1; field in FixScaffoldGaps
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| /dports/biology/bbmap/bbmap/current/kmer/ |
| H A D | AbstractKmerTableSet.java | 446 public long maxReads=-1; field in AbstractKmerTableSet
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| /dports/biology/bbmap/bbmap/current/prok/ |
| H A D | MergeRibo.java | 695 private long maxReads=-1; field in MergeRibo
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