| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | ReadInputStream.java | 11 public static final ArrayList<Read> toReads(String fname, int defaultFormat, long maxReads){ in toReads()
17 public static final Read[] toReadArray(FileFormat ff, long maxReads){ in toReadArray()
22 public static final ArrayList<Read> toReads(FileFormat ff, long maxReads){ in toReads()
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| H A D | ConcurrentReadInputStream.java | 31 …protected static ConcurrentReadInputStream getReadInputStream(long maxReads, boolean keepSamHeader… in getReadInputStream()
51 …public static ConcurrentReadInputStream getReadInputStream(long maxReads, boolean keepSamHeader, F… in getReadInputStream()
56 …public static ConcurrentReadInputStream getReadInputStream(long maxReads, boolean keepSamHeader, F… in getReadInputStream()
67 public static ConcurrentReadInputStream getReadInputStream(long maxReads, boolean keepSamHeader, in getReadInputStream()
83 public static ConcurrentReadInputStream getReadInputStream(long maxReads, boolean keepSamHeader, in getReadInputStream()
210 public static ArrayList<Read> getReads(long maxReads, boolean keepSamHeader, in getReads()
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| H A D | CrisWrapper.java | 17 public CrisWrapper(long maxReads, boolean keepSamHeader, FileFormat ff1, FileFormat ff2){ in CrisWrapper()
21 …public CrisWrapper(long maxReads, boolean keepSamHeader, FileFormat ff1, FileFormat ff2, String qf… in CrisWrapper()
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| H A D | SequentialReadInputStream.java | 182 public final long maxReads; field in SequentialReadInputStream
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| H A D | SamStreamerWrapper.java | 209 private long maxReads=-1; field in SamStreamerWrapper
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| H A D | SamStreamerMF.java | 150 protected long maxReads=-1; field in SamStreamerMF
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| /dports/biology/bbmap/bbmap/current/var/ |
| H A D | GenerateVarlets3.java | 123 …public GenerateVarlets3(String fname1, String fname2, String outname_, long maxReads, String sites… in GenerateVarlets3()
128 …public GenerateVarlets3(RTextInputStream stream_, String outname_, long maxReads, String sitesfile… in GenerateVarlets3()
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | MergeBarcodes.java | 187 … static HashMap<String, Read> loadBarcodes(PrintStream outstream, FileFormat ffbar, long maxReads){ in loadBarcodes()
425 private long maxReads=-1; field in MergeBarcodes
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| H A D | CountUniqueness.java | 100 private long maxReads=-1; field in CountUniqueness
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| H A D | SplitSam6Way.java | 64 long maxReads=Long.MAX_VALUE; in SplitSam6Way() local
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| /dports/biology/bbmap/bbmap/current/template/ |
| H A D | A_Sample_Generator.java | 456 private final long maxReads; field in A_Sample_Generator.ProcessThread
498 private long maxReads=-1; field in A_Sample_Generator
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| H A D | A_SampleD.java | 162 private long maxReads=-1; field in A_SampleD
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| H A D | A_Sample2.java | 153 private long maxReads=-1; field in A_Sample2
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| H A D | A_SampleSummary.java | 150 private long maxReads=-1; field in A_SampleSummary
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| H A D | A_SampleSamStreamer.java | 519 private long maxReads=-1; local
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| /dports/biology/bbmap/bbmap/current/bloom/ |
| H A D | KmerCountAbstract.java | 40 public static long maxReads=-1; field in KmerCountAbstract
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| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | RenameNcbiToTid.java | 152 private long maxReads=-1; field in RenameNcbiToTid
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| H A D | FilterAssemblySummary.java | 172 private long maxReads=-1; field in FilterAssemblySummary
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| /dports/biology/bbmap/bbmap/current/align2/ |
| H A D | MakeQualityHistogram.java | 21 long maxReads=0; in main() local
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| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/java/io/InputStream/ |
| H A D | Skip.java | 195 public void setState(long skipReturn, long maxReads) { in setState()
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