| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
| H A D | cpermutator8b.cpp | 25 int mism = 1 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
41 int mism = 2 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
58 int mism = 3 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
76 int mism = 4 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
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| H A D | coligofarapp-tests.cpp | 12 void operator () ( Uint8 hash, int mism, Uint8 alt ) { ++m_count; } in operator ()()
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| H A D | cscancallback.hpp | 15 void operator () ( const Uint8& hash, Uint4 mism, unsigned amb ) { in operator ()()
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| H A D | chashpopulator.hpp | 162 inline void CHashPopulator::operator () ( Uint8 hash, int mism, int amb ) in operator ()()
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| H A D | chashatom.hpp | 51 int mism = 0, in CHashAtom()
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| H A D | csamalignments.cpp | 279 string mism = ""; in ParseSamLine() local
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| /dports/astro/pykep/pykep-2.6/src/sims_flanagan/ |
| H A D | leg.cpp | 80 sc_state mism; in operator <<() local
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| /dports/astro/py-pykep/pykep-2.6/src/sims_flanagan/ |
| H A D | leg.cpp | 80 sc_state mism; in operator <<() local
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
| H A D | hhmatrices-C.h | 168 const float mism = 2000; // standard mismatch score variable
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| /dports/graphics/opencollada/OpenCOLLADA-1.6.68/Externals/MayaDataModel/include/ |
| H A D | MayaDMShadingEngine.h | 47 void setMiExportVolumeSampler(bool mism) in setMiExportVolumeSampler()
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| /dports/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f/ |
| H A D | sequence.c | 662 int i, j, k, mism, rdis, limit, max_val, cur_val = 0; in shine_dalgarno_exact() local
738 int i, j, k, mism, rdis, limit, max_val, cur_val = 0; in shine_dalgarno_mm() local
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| /dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/src/ |
| H A D | dforceb.f90 | 60 integer j,k,ig,iv,jv,ix,jx,is,ia, iss,iss1,mism local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.cpp | 395 …nge(TSignedSeqPos orig_start, TSignedSeqPos edited_start, int len, const string& mism, int left_or… in InsertOneToOneRange()
422 string mism; in InsertIndelRangesForInterval() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 684 …SMapRange(SMapRangeEdge from, SMapRangeEdge to, const string& mism) : m_from(from), m_to(to), m_mi… in SMapRange()
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| /dports/games/hyperrogue/hyperrogue-12.0f/ |
| H A D | rulegen.cpp | 597 void extend_analyzer(twalker cw_target, int dir, int id, int mism, twalker rg) { in extend_analyzer()
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