Searched defs:nRateCats (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/mrbayes/MrBayes-3.2.7/src/ |
| H A D | likelihood.c | 2726 nStatesSquared, nRateCats; in CondLikeRoot_Gen_GibbsGamma() local
3200 nRateCats; in CondLikeRoot_NUC4_GibbsGamma() local
4661 int a, c, i, j, k, nStates, nStatesSquared, nRateCats; in CondLikeUp_Gen() local
4749 int c, k, nRateCats; in CondLikeUp_NUC4() local
5090 int c, i, j, n, nStates, *rateCat, nRateCats; in CondLikeScaler_Gen_GibbsGamma() local
5362 int c, i, j, nRateCats, *rateCat; in CondLikeScaler_NUC4_GibbsGamma() local
7470 int b, c, j, k, nBetaCats, nRateCats, nStates, numReps; in Likelihood_Std() local
|
| H A D | mcmc.c | 5329 int c, i, k, *rateCat, nStates, nRateCats, nPosRateCats, id; in GibbsSampleGamma() local
5700 int d, i, j, useAugmentedModels, nRateCats; in InitAugmentedModels() local
|
| /dports/biology/fasttree/FastTree-2.1.10_5/ |
| H A D | FastTree-2.1.10.c | 1331 int nRateCats; member
1662 int nRateCats = nDefaultRateCats; in main() local
6101 double RescaleGammaLogLk(int nPos, int nRateCats, /*IN*/numeric_t *rates, /*IN*/double *site_loglk, in RescaleGammaLogLk()
|