| /dports/biology/vt/vt-0.57721/ |
| H A D | candidate_motif_picker.cpp | 67 uint32_t n_allele = bcf_get_n_allele(v); in generate_candidate_motifs() local
238 int32_t n_allele = bcf_get_n_allele(v); in update_exact_repeat_unit() local
459 uint32_t n_allele = bcf_get_n_allele(v); in is_in_indel_fragment() local
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| H A D | variant_manip.cpp | 112 int32_t n_allele = bcf_get_n_allele(v); in is_normalized() local
205 int32_t n_allele = bcf_get_n_allele(v); in contains_N() local
242 int32_t n_allele = bcf_get_n_allele(v); in classify_variant() local
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| H A D | subset.cpp | 186 int32_t n_allele = bcf_get_n_allele(v); in subset() local
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| H A D | set_ref.cpp | 222 int32_t n_allele = bcf_get_n_allele(v); in set_ref() local
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| H A D | variant.cpp | 218 int32_t n_allele = bcf_get_n_allele(v); in classify() local
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| H A D | vntrize.cpp | 239 int32_t n_allele = bcf_get_n_allele(overlap_vars[0]); in vntrize() local
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| H A D | decompose_blocksub.cpp | 161 int32_t n_allele = bcf_get_n_allele(v); in decompose_blocksub() local
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| H A D | decompose2.cpp | 178 int32_t n_allele = bcf_get_n_allele(v); in decompose2() local
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| H A D | decompose.cpp | 208 int32_t n_allele = bcf_get_n_allele(v); in decompose() local
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| H A D | estimator.cpp | 361 int32_t n_allele, float *MLE_AF, float *MLE_GF, int32_t& n, in compute_gl_af()
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| /dports/biology/vcftools/vcftools-0.1.16/src/cpp/ |
| H A D | bcf_entry_setters.cpp | 11 void bcf_entry::set_ALT(const int n_allele) in set_ALT()
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| /dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
| H A D | vcf.h | 213 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
| H A D | vcf.h | 213 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/stacks/stacks-2.4/htslib/htslib/ |
| H A D | vcf.h | 213 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
| H A D | vcf.h | 213 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | vcf.h | 220 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | vcf.h | 220 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/htslib/htslib-1.14/htslib/ |
| H A D | vcf.h | 220 uint32_t n_info:16, n_allele:16; member
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/ |
| H A D | plink2_import.cc | 7648 uint32_t n_allele = vrec_header[6] >> 16; in BcfToPgen() local
8315 uint32_t n_allele = 0; in BcfToPgen() local
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| H A D | plink2_export.cc | 8301 uint16_t n_allele = allele_ct; variable
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| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_data.c | 9172 uint32_t n_allele; in bcf_to_bed() local
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