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Searched defs:n_seqs (Results 1 – 25 of 31) sorted by relevance

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/dports/biology/bwa/bwa-0.7.17/
H A Dbwaseqio.c96 int n_seqs, l, i; in bwa_read_bam() local
155 int n_seqs, l, i, is_comp = mode&BWA_MODE_COMPREAD, is_64 = mode&BWA_MODE_IL13, l_bc = mode>>24; in bwa_read_seq() local
223 void bwa_free_read_seq(int n_seqs, bwa_seq_t *seqs) in bwa_free_read_seq()
H A Dbwtaln.c83 void bwa_cal_sa_reg_gap(int tid, bwt_t *const bwt, int n_seqs, bwa_seq_t *seqs, const gap_opt_t *op… in bwa_cal_sa_reg_gap()
132 int n_seqs; member
161 int i, n_seqs; in bwa_aln_core() local
H A Dbwape.c81 static int infer_isize(int n_seqs, bwa_seq_t *seqs[2], isize_info_t *ii, double ap_prior, int64_t L) in infer_isize()
260 int bwa_cal_pac_pos_pe(const bntseq_t *bns, const char *prefix, bwt_t *const _bwt, int n_seqs, bwa_… in bwa_cal_pac_pos_pe()
496 ubyte_t *bwa_paired_sw(const bntseq_t *bns, const ubyte_t *_pacseq, int n_seqs, bwa_seq_t *seqs[2],… in bwa_paired_sw()
627 int i, j, n_seqs; in bwa_sai2sam_pe_core() local
H A Dbwase.c144 void bwa_cal_pac_pos(const bntseq_t *bns, const char *prefix, int n_seqs, bwa_seq_t *seqs, int max_… in bwa_cal_pac_pos()
287 void bwa_refine_gapped(const bntseq_t *bns, int n_seqs, bwa_seq_t *seqs, ubyte_t *_pacseq) in bwa_refine_gapped()
510 int i, n_seqs, m_aln; in bwa_sai2sam_se_core() local
H A Dbntseq.h58 int32_t n_seqs; member
H A Dfastmap.c34 int n_seqs; member
H A Dbntseq.c141 int32_t n_seqs; in bns_restore_core() local
/dports/textproc/ibus/ibus-1.5.24/src/
H A Dibuscomposetable.h42 gint n_seqs; member
51 gint n_seqs; member
H A Dibuscomposetable.c539 guint16 n_seqs; in ibus_compose_table_serialize() local
669 guint16 n_seqs = 0; in ibus_compose_table_deserialize() local
1058 gint n_seqs) in ibus_compose_table_list_add_array()
H A Dibusenginesimple.c643 int n_seqs; in check_table() local
1732 gint n_seqs) in ibus_engine_simple_add_table()
/dports/math/gecode/gecode-0916a1a/gecode/int/
H A Dldsb.hh233 unsigned int n_seqs; member in Gecode::Int::LDSB::VariableSequenceSymmetryImp
275 unsigned int n_seqs; member in Gecode::Int::LDSB::ValueSequenceSymmetryImp
/dports/x11-toolkits/gtk30/gtk+-3.24.31/gtk/
H A Dgtkcomposetable.h34 int n_seqs; member
H A Dgtkcomposetable.c513 guint16 n_seqs = compose_table->n_seqs; in gtk_compose_table_serialize() local
578 guint16 n_seqs; in gtk_compose_table_load_cache() local
817 int n_seqs) in gtk_compose_table_list_add_array()
H A Dgtkimcontextsimple.c1186 int n_seqs) in gtk_im_context_simple_add_table()
/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/bwa/
H A Dbntseq.h58 int32_t n_seqs; member
/dports/biology/hhsuite/hh-suite-3.3.0/src/
H A Dhhhmm.h29 int n_seqs; // number of sequences read in (INCLUDING >ss_ and >cf_ sequences) variable
/dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/
H A Dhhhmm.h32 int n_seqs; // number of sequences read in (INCLUDING >ss_ and >cf_ sequences) variable
/dports/x11-toolkits/gtk20/gtk+-2.24.33/gtk/
H A Dgtkimcontextsimple.c45 gint n_seqs; member
1227 gint n_seqs) in gtk_im_context_simple_add_table()
/dports/biology/bfc/bfc-69ab176e/
H A Dcount.c37 int n_seqs; member
/dports/biology/diamond/diamond-2.0.13/src/data/
H A Dsequence_file.h40 size_t n_seqs; member
/dports/x11-toolkits/gtk40/gtk-4.4.1/gtk/
H A Dgtkimcontextsimple.c245 int n_seqs) in add_compose_table_from_data()
1300 int n_seqs) in gtk_im_context_simple_add_table()
H A Dgtkcomposetable.c635 int n_seqs) in gtk_compose_table_data_hash()
1184 int n_seqs) in gtk_compose_table_new_with_data()
/dports/biology/diamond/diamond-2.0.13/src/data/dmnd/
H A Ddmnd.cpp243 …en, uint64_t &offset, vector<SeqInfo> &pos_array, OutputFile &out, size_t &letters, size_t &n_seqs) in push_seq()
283 size_t letters = 0, n = 0, n_seqs = 0, total_seqs = 0; in make_db() local
/dports/biology/trimadap/trimadap-0.1-3-gddfef21/
H A Dtrimadap-mt.c235 int n_seqs; member
/dports/biology/seqtk/seqtk-1.3/
H A Dseqtk.c1028 uint64_t i, num = 0, n_seqs = 0; in stk_sample() local
1184 int64_t n_seqs = 0; in stk_seq() local

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