| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/locfit/ |
| H A D | lf_fitfun.c | 44 INT coefnumber(deriv,nd,kt,d,deg) in coefnumber() argument
74 INT *mi, nd; local
120 void fitfun(lf,x,t,f,deriv,nd) in fitfun() argument
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| H A D | lfstruc.h | 63 INT nl, nv, nnl, nce, nk, nn, mi[LENM], ord, deriv[MXDEG+2], nd; member
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| H A D | m_max.c | 175 double nc, nd, cut; local
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| H A D | pcomp.c | 132 { INT i, *deriv, nd; local
154 INT i, *deriv, nd, *mi; local
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| H A D | startlf.c | 256 { INT i, nd; local
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| H A D | wdiag.c | 64 { INT i, j, p, *mi, *deriv, nd; local
111 INT i, ii, j, k, l, m, d, p, *mi, *deriv, nd; local
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/pcre/ |
| H A D | pcre_dfa_exec.c | 1054 int nd; in internal_dfa_exec() local
1286 int nd; in internal_dfa_exec() local
1527 int nd; in internal_dfa_exec() local
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | emowse.c | 440 ajint nd; in emowse_match() local
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| H A D | matcher.c | 1518 ajint nd; in matcher_Calcons() local
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| H A D | stretcher.c | 119 static ajint nd; variable
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| /dports/biology/exonerate/exonerate-2.4.0/src/model/ |
| H A D | ner.c | 40 register NER_Data *nd = g_new0(NER_Data, 1); in NER_Data_create() local
46 void NER_Data_destroy(NER_Data *nd){ in NER_Data_destroy()
57 register NER_Data *nd = (NER_Data*)user_data; in ner_ner_open_calc_func() local
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| H A D | ner.h | 42 #define NER_Data_get_query(nd) Affine_Data_get_query(&((nd)->ad)) argument
43 #define NER_Data_get_target(nd) Affine_Data_get_target(&((nd)->ad)) argument
44 #define NER_Data_get_dna_submat(nd) Affine_Data_get_dna_submat(&((nd)->ad)) argument
45 #define NER_Data_get_protein_submat(nd) \ argument
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| H A D | ner.test.c | 41 register NER_Data *nd; in Argument_main() local
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| /dports/biology/exonerate/exonerate-2.4.0/src/util/ |
| H A D | fastanrdb.c | 33 register NRDB_Data *nd = g_new(NRDB_Data, 1); in NRDB_Data_create() local
41 static void NRDB_Data_destroy(NRDB_Data *nd){ in NRDB_Data_destroy()
71 register NRDB_Data *nd = NRDB_Data_create(fdbs); in fasta_nrdb_traverse_func() local
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| /dports/biology/fasta/fasta/ |
| H A D | align.c | 58 int nc, nd, gscore; variable
66 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
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| H A D | fffasta.c | 244 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
1381 int nd, ndo, n00; /* diagonal array size */ local
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| H A D | lalign2.c | 523 int op, nid, lenc, nd, ns, itmp; in calcons() local
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| H A D | lsim2.c | 187 int nc, nd, ns, nident; /* for display */ in SIM() local
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| H A D | lsim3.c | 215 int nc, nd, ns, nident; /* for display */ in SIM() local
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| H A D | prdf.c | 77 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
622 int nd, ndo; /* diagonal array size */ local
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| H A D | prss.c | 61 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
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| H A D | score_al.c | 61 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
104 int nc, nd; local
374 calcons(char *aa0, int n0, char *aa1, int n1, int *nd) { in calcons()
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| H A D | ssearch.c | 128 int n0, n1, nd, noff; /* length of aa0, length of aa1, n0+n1, variable
724 int nd,ndo; /* diagonal array size */ local
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| H A D | zxlgmata.c | 246 int op, lenc, not_c, nd, ns, itmp; local
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| H A D | zzlgmata.c | 405 int op, lenc, nd, ns, itmp; local
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