| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/downsampling/ |
| H A D | PositionalDownsampler.java | 51 public void submit( final GATKRead newRead ) { in submit()
72 private void handlePositionalChange( final GATKRead newRead ) { in handlePositionalChange()
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| H A D | MutectDownsampler.java | 48 public void submit( final GATKRead newRead ) { in submit()
70 private void handlePositionalChange( final GATKRead newRead ) { in handlePositionalChange()
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| H A D | PassThroughDownsampler.java | 24 public void submit(final GATKRead newRead ) { in submit()
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| H A D | FractionalDownsampler.java | 42 public void submit( final GATKRead newRead ) { in submit()
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| H A D | ReservoirDownsampler.java | 96 public void submit ( final GATKRead newRead ) { in submit()
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| /dports/graphics/tesseract/tesseract-5.0.0/java/com/google/scrollview/ui/ |
| H A D | SVImageHandler.java | 46 int newRead = -1; in readImage() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/transformers/ |
| H A D | MisencodedBaseQualityReadTransformerUnitTest.java | 37 GATKRead newRead = tr.apply(read); in testGoodQuals() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
| H A D | PSFilter.java | 78 final GATKRead newRead = new SAMRecordToGATKReadAdapter(new SAMRecord(header)); in clearReadAlignment() local
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| /dports/emulators/mgba/mgba-0.9.2/src/util/ |
| H A D | vfs.c | 118 ssize_t newRead = vf->read(vf, &buffer[bytesRead], 1); in VFileReadline() local
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| /dports/games/libretro-mgba/mgba-6186d45/src/util/ |
| H A D | vfs.c | 118 ssize_t newRead = vf->read(vf, &buffer[bytesRead], 1); in VFileReadline() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/downsampling/ |
| H A D | AlleleBiasedDownsamplingUtilsUnitTest.java | 122 …final GATKRead newRead = ArtificialReadUtils.createArtificialRead(header, "read" + i, 0, 1, readBa… in testOneCaseUsingPublicAPI() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
| H A D | creadtagger.cpp | 46 bool newRead = false; in ProcessReadData() local
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| H A D | bmfilter-main.cpp | 254 bool newRead = false; in ProcessReadData() local
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| /dports/games/arx-libertatis/arx-libertatis-1.1.2/src/audio/openal/ |
| H A D | OpenALSource.cpp | 758 ALint newRead; in updateBuffers() local
|
| /dports/devel/hadoop2/hadoop-2.7.2-src/hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/ |
| H A D | TeraInputFormat.java | 256 long newRead = in.read(buffer, read, RECORD_LENGTH - read); in nextKeyValue() local
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| /dports/math/stp/stp-2.3.3/lib/AbsRefineCounterExample/ |
| H A D | CounterExample.cpp | 399 ASTNode newRead = term; in Expand_ReadOverWrite_UsingModel() local
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| /dports/x11/virtualgl/virtualgl-3.0/server/ |
| H A D | faker-gl.cpp | 805 GLXDrawable newRead = 0, newDraw = 0; in glViewport() local
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| /dports/databases/pgbackrest/pgbackrest-release-2.35/src/storage/ |
| H A D | storage.intern.h | 248 StorageInterfaceNewRead *newRead; member
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| /dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2440 Value newRead = lb.create<vector::TransferReadOp>( in matchAndRewrite() local
2754 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2872 Value newRead = rewriter.create<memref::LoadOp>( in matchAndRewrite() local
2891 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
3034 auto newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
| H A D | GenomeSequence.cpp | 833 std::string newRead; in getReverseRead() local
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| /dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2402 Value newRead = lb.create<vector::TransferReadOp>( in matchAndRewrite() local
2697 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2819 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2962 auto newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
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| /dports/devel/wasi-libcxx/llvm-project-13.0.1.src/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2402 Value newRead = lb.create<vector::TransferReadOp>( in matchAndRewrite() local
2697 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2819 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2962 auto newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
|
| /dports/devel/llvm13/llvm-project-13.0.1.src/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2402 Value newRead = lb.create<vector::TransferReadOp>( in matchAndRewrite() local
2697 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2819 Value newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
2962 auto newRead = rewriter.create<vector::TransferReadOp>( in matchAndRewrite() local
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| /dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2567 Value newRead = vector_transfer_read(extract.getType(), read.source(), in matchAndRewrite() local
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/mlir/lib/Dialect/Vector/ |
| H A D | VectorTransforms.cpp | 2536 Value newRead = vector_transfer_read(extract.getType(), read.memref(), in matchAndRewrite() local
|