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Searched defs:overlapSize (Results 1 – 25 of 74) sorted by relevance

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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/fragments/
H A DFragmentUtilsUnitTest.java65 …lic void testAdjustingTwoReads(final GATKRead read1, final GATKRead read2, final int overlapSize) { in testAdjustingTwoReads()
111 …ustingTwoReadsWithSoftClipping(final GATKRead read1, final GATKRead read2, final int overlapSize) { in testAdjustingTwoReadsWithSoftClipping()
158 … final int read1Softclips, final GATKRead read2, final int read2Softclips, final int overlapSize) { in testAdjustingTwoReadsWithSoftClippingOverlappingEachother()
/dports/science/PETSc/petsc-3.14.1/src/mat/tutorials/
H A Dex3.c30 PetscInt overlapSize = 2, globalIdx[2]; in main() local
/dports/math/openturns/openturns-1.18/python/doc/examples/data_analysis/estimate_stochastic_processes/
H A Dplot_estimate_spectral_density_function.py51 overlapSize = 0.3 variable
/dports/misc/openmvg/openMVG-2.0/src/openMVG/matching_image_collection/
H A DPair_Builder.hpp37 inline Pair_Set contiguousWithOverlap(const size_t N, const size_t overlapSize) in contiguousWithOverlap()
/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/
H A Didentitygrid.hh345 unsigned int overlapSize(int codim) const { in overlapSize() function in Dune::IdentityGrid
357 unsigned int overlapSize(int level, int codim) const { in overlapSize() function in Dune::IdentityGrid
/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/
H A DGenomeAlignerIndex.h128 static const int overlapSize; variable
/dports/multimedia/jmref/JM/lencod/src/
H A Dimg_dist_ssim.c40 int overlapSize = p_Inp->SSIMOverlapSize; in compute_ssim() local
H A Dimg_dist_ms_ssim.c56 int overlapSize = p_Inp->SSIMOverlapSize; in compute_structural_components() local
116 int overlapSize = p_Inp->SSIMOverlapSize; in compute_luminance_component() local
/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/filteredgrid/
H A Dgrid.hh259 int overlapSize ( int level, int codim ) const in overlapSize() function in Dune::FilteredGrid
266 int overlapSize ( int codim ) const in overlapSize() function in Dune::FilteredGrid
H A Dgridview.hh180 int overlapSize ( int codim ) const in overlapSize() function in Dune::FilteredGridView
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/
H A DSequenceWalkerTask.h52 int overlapSize; // overlap for 2 neighbor regions variable
H A DSequenceDbiWalkerTask.cpp111 …uenceDbiWalkerTask::splitRange(const U2Region &range, int chunkSize, int overlapSize, int lastChun… in splitRange()
H A DSequenceWalkerTask.cpp126 …SequenceWalkerTask::splitRange(const U2Region &range, int chunkSize, int overlapSize, int lastChun… in splitRange()
/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/prismgrid/
H A Dgrid.hh280 int overlapSize ( int level, int codim ) const in overlapSize() function in Dune::PrismGrid
385 inline int PrismGrid< HostGrid >::overlapSize ( int codim ) const in overlapSize() function in Dune::PrismGrid
/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/common/
H A Ddefaultgridview.hh179 int overlapSize(int codim) const in overlapSize() function in Dune::DefaultLevelGridView
361 int overlapSize(int codim) const in overlapSize() function in Dune::DefaultLeafGridView
/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/onedgrid/
H A Donedgridviews.hh185 int overlapSize([[maybe_unused]] int codim) const in overlapSize() function in Dune::OneDGridLevelGridView
363 int overlapSize([[maybe_unused]] int codim) const in overlapSize() function in Dune::OneDGridLeafGridView
/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/cacheitgrid/
H A Dgridview.hh185 int overlapSize ( int codim ) const in overlapSize() function in Dune::CacheItGridLevelGridView
365 int overlapSize ( int codim ) const in overlapSize() function in Dune::CacheItGridLeafGridView
/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/uggrid/
H A Duggridviews.hh194 int overlapSize(int codim) const in overlapSize() function in Dune::UGGridLevelGridView
384 int overlapSize(int codim) const in overlapSize() function in Dune::UGGridLeafGridView
/dports/math/dune-polygongrid/dune-polygongrid-f76933aa51aa3ae3e58a5705f9f7ce7d1f6c012c/dune/polygongrid/
H A Dgridview.hh133 int overlapSize ( int codim ) const { return 0; } in overlapSize() function in Dune::__PolygonGrid::GridView
/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/multispgrid/
H A Dgridview.hh251 int overlapSize ( int codim ) const in overlapSize() function in Dune::MultiSPLeafGridView
485 int overlapSize ( int codim ) const in overlapSize() function in Dune::MultiSPLevelGridView
/dports/math/dune-alugrid/dune-alugrid-08c6496d4d4a33df6456c3b402182f353dc2e76d/dune/alugrid/3d/
H A Dgridview.hh182 int overlapSize(int codim) const in overlapSize() function in Dune::ALU3dLevelGridView
373 int overlapSize(int codim) const in overlapSize() function in Dune::ALU3dLeafGridView
/dports/math/dune-foamgrid/dune-foamgrid-43bfdb6181fae187fd803eca935a030d8d5ab0bc/dune/foamgrid/
H A Dfoamgrid.hh553 unsigned int overlapSize(int codim) const { in overlapSize() function in Dune::FoamGrid
565 unsigned int overlapSize(int level, int codim) const { in overlapSize() function in Dune::FoamGrid
/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/albertagrid/
H A Dgridview.hh214 int overlapSize ( [[maybe_unused]] int codim ) const { return 0; } in overlapSize() function in Dune::AlbertaLevelGridView
422 int overlapSize ( [[maybe_unused]] int codim ) const { return 0; } in overlapSize() function in Dune::AlbertaLeafGridView
/dports/devel/qtcreator/qt-creator-opensource-src-5.0.3/src/libs/utils/
H A Dcrumblepath.cpp113 const int overlapSize = 2; in paintEvent() local
/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/
H A DSWAlgorithmTask.cpp109 quint64 overlapSize = calculateMatrixLength(sWatermanConfig.sqnc.length(), in setupTask() local
676 …quint64 overlapSize = calculateMatrixLength(*sqnc, *ptrn, settings->gapOpen, settings->gapExtd, ma… in setupTask() local

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