/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/fragments/ |
H A D | FragmentUtilsUnitTest.java | 65 …lic void testAdjustingTwoReads(final GATKRead read1, final GATKRead read2, final int overlapSize) { in testAdjustingTwoReads() 111 …ustingTwoReadsWithSoftClipping(final GATKRead read1, final GATKRead read2, final int overlapSize) { in testAdjustingTwoReadsWithSoftClipping() 158 … final int read1Softclips, final GATKRead read2, final int read2Softclips, final int overlapSize) { in testAdjustingTwoReadsWithSoftClippingOverlappingEachother()
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/dports/science/PETSc/petsc-3.14.1/src/mat/tutorials/ |
H A D | ex3.c | 30 PetscInt overlapSize = 2, globalIdx[2]; in main() local
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/dports/math/openturns/openturns-1.18/python/doc/examples/data_analysis/estimate_stochastic_processes/ |
H A D | plot_estimate_spectral_density_function.py | 51 overlapSize = 0.3 variable
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/dports/misc/openmvg/openMVG-2.0/src/openMVG/matching_image_collection/ |
H A D | Pair_Builder.hpp | 37 inline Pair_Set contiguousWithOverlap(const size_t N, const size_t overlapSize) in contiguousWithOverlap()
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/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/ |
H A D | identitygrid.hh | 345 unsigned int overlapSize(int codim) const { in overlapSize() function in Dune::IdentityGrid 357 unsigned int overlapSize(int level, int codim) const { in overlapSize() function in Dune::IdentityGrid
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/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/ |
H A D | GenomeAlignerIndex.h | 128 static const int overlapSize; variable
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/dports/multimedia/jmref/JM/lencod/src/ |
H A D | img_dist_ssim.c | 40 int overlapSize = p_Inp->SSIMOverlapSize; in compute_ssim() local
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H A D | img_dist_ms_ssim.c | 56 int overlapSize = p_Inp->SSIMOverlapSize; in compute_structural_components() local 116 int overlapSize = p_Inp->SSIMOverlapSize; in compute_luminance_component() local
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/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/filteredgrid/ |
H A D | grid.hh | 259 int overlapSize ( int level, int codim ) const in overlapSize() function in Dune::FilteredGrid 266 int overlapSize ( int codim ) const in overlapSize() function in Dune::FilteredGrid
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H A D | gridview.hh | 180 int overlapSize ( int codim ) const in overlapSize() function in Dune::FilteredGridView
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
H A D | SequenceWalkerTask.h | 52 int overlapSize; // overlap for 2 neighbor regions variable
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H A D | SequenceDbiWalkerTask.cpp | 111 …uenceDbiWalkerTask::splitRange(const U2Region &range, int chunkSize, int overlapSize, int lastChun… in splitRange()
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H A D | SequenceWalkerTask.cpp | 126 …SequenceWalkerTask::splitRange(const U2Region &range, int chunkSize, int overlapSize, int lastChun… in splitRange()
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/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/prismgrid/ |
H A D | grid.hh | 280 int overlapSize ( int level, int codim ) const in overlapSize() function in Dune::PrismGrid 385 inline int PrismGrid< HostGrid >::overlapSize ( int codim ) const in overlapSize() function in Dune::PrismGrid
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/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/common/ |
H A D | defaultgridview.hh | 179 int overlapSize(int codim) const in overlapSize() function in Dune::DefaultLevelGridView 361 int overlapSize(int codim) const in overlapSize() function in Dune::DefaultLeafGridView
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/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/onedgrid/ |
H A D | onedgridviews.hh | 185 int overlapSize([[maybe_unused]] int codim) const in overlapSize() function in Dune::OneDGridLevelGridView 363 int overlapSize([[maybe_unused]] int codim) const in overlapSize() function in Dune::OneDGridLeafGridView
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/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/cacheitgrid/ |
H A D | gridview.hh | 185 int overlapSize ( int codim ) const in overlapSize() function in Dune::CacheItGridLevelGridView 365 int overlapSize ( int codim ) const in overlapSize() function in Dune::CacheItGridLeafGridView
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/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/uggrid/ |
H A D | uggridviews.hh | 194 int overlapSize(int codim) const in overlapSize() function in Dune::UGGridLevelGridView 384 int overlapSize(int codim) const in overlapSize() function in Dune::UGGridLeafGridView
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/dports/math/dune-polygongrid/dune-polygongrid-f76933aa51aa3ae3e58a5705f9f7ce7d1f6c012c/dune/polygongrid/ |
H A D | gridview.hh | 133 int overlapSize ( int codim ) const { return 0; } in overlapSize() function in Dune::__PolygonGrid::GridView
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/dports/math/dune-metagrid/dune-metagrid-45fe80d530d18d8b86e77f20e38865f2101e571a/dune/grid/multispgrid/ |
H A D | gridview.hh | 251 int overlapSize ( int codim ) const in overlapSize() function in Dune::MultiSPLeafGridView 485 int overlapSize ( int codim ) const in overlapSize() function in Dune::MultiSPLevelGridView
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/dports/math/dune-alugrid/dune-alugrid-08c6496d4d4a33df6456c3b402182f353dc2e76d/dune/alugrid/3d/ |
H A D | gridview.hh | 182 int overlapSize(int codim) const in overlapSize() function in Dune::ALU3dLevelGridView 373 int overlapSize(int codim) const in overlapSize() function in Dune::ALU3dLeafGridView
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/dports/math/dune-foamgrid/dune-foamgrid-43bfdb6181fae187fd803eca935a030d8d5ab0bc/dune/foamgrid/ |
H A D | foamgrid.hh | 553 unsigned int overlapSize(int codim) const { in overlapSize() function in Dune::FoamGrid 565 unsigned int overlapSize(int level, int codim) const { in overlapSize() function in Dune::FoamGrid
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/dports/math/dune-grid/dune-grid-de36e4b4e99da4cd7a120a39779345e701821115/dune/grid/albertagrid/ |
H A D | gridview.hh | 214 int overlapSize ( [[maybe_unused]] int codim ) const { return 0; } in overlapSize() function in Dune::AlbertaLevelGridView 422 int overlapSize ( [[maybe_unused]] int codim ) const { return 0; } in overlapSize() function in Dune::AlbertaLeafGridView
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/dports/devel/qtcreator/qt-creator-opensource-src-5.0.3/src/libs/utils/ |
H A D | crumblepath.cpp | 113 const int overlapSize = 2; in paintEvent() local
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/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/ |
H A D | SWAlgorithmTask.cpp | 109 quint64 overlapSize = calculateMatrixLength(sWatermanConfig.sqnc.length(), in setupTask() local 676 …quint64 overlapSize = calculateMatrixLength(*sqnc, *ptrn, settings->gapOpen, settings->gapExtd, ma… in setupTask() local
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