Searched defs:phitrefs (Results 1 – 4 of 4) sorted by relevance
45 void CleaveOffByTail(CSplign::THitRefs* phitrefs, size_t polya_start) in CleaveOffByTail()
753 void CSplign::x_SplitQualifyingHits(THitRefs* phitrefs) in x_SplitQualifyingHits()808 void CSplign::x_SetPattern(THitRefs* phitrefs) in x_SetPattern()1158 void CSplign::Run(THitRefs* phitrefs) in Run()1316 bool CSplign::AlignSingleCompartment(THitRefs* phitrefs, in AlignSingleCompartment()1425 CSplign::SAlignedCompartment CSplign::x_RunOnCompartment(THitRefs* phitrefs, in x_RunOnCompartment()
364 void ReadCompartment(istream& istr, CSplign::THitRefs* phitrefs) in ReadCompartment()380 THitRefs* phitrefs, in x_GetNextComp()852 THitRefs* phitrefs) in x_GetBl2SeqHits()889 void CSplignApp::x_RunSplign(bool raw_hits, THitRefs* phitrefs, in x_RunSplign()
213 void CAppHitFilter::x_ReadInputHits(THitRefs* phitrefs, bool one_pair) in x_ReadInputHits()334 THitRefs* phitrefs, in x_IterateSeqAlignList()