| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/composition_adjustment/ |
| H A D | composition_adjustment.h | 87 int positionBased; /**< is the matrix position-based */ member
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| H A D | redo_alignment.h | 335 int positionBased; /**< true if the search is position-based */ member
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/composition_adjustment/ |
| H A D | composition_adjustment.h | 87 int positionBased; /**< is the matrix position-based */ member
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| H A D | redo_alignment.h | 335 int positionBased; /**< true if the search is position-based */ member
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| H A D | redo_alignment.c | 1017 int positionBased, in Blast_RedoAlignParamsNew()
1337 int positionBased = params->positionBased; in Blast_RedoOneMatchSmithWaterman() local
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| H A D | composition_adjustment.c | 978 Blast_MatrixInfoNew(int rows, int cols, int positionBased) in Blast_MatrixInfoNew()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/composition_adjustment/ |
| H A D | composition_adjustment.h | 87 int positionBased; /**< is the matrix position-based */ member
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| H A D | redo_alignment.h | 335 int positionBased; /**< true if the search is position-based */ member
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/ |
| H A D | blast_gapalign.h | 70 Boolean positionBased; /**< Is this PSI-BLAST? */ member
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_gapalign.h | 70 Boolean positionBased; /**< Is this PSI-BLAST? */ member
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| H A D | blast_kappa.c | 1998 Boolean positionBased) in s_SavedParametersNew()
2051 Boolean positionBased) in s_RecordInitialSearch()
2138 Boolean positionBased, in s_RestoreSearch()
2412 Boolean positionBased = (Boolean) (context->sbp->psi_matrix != NULL); in s_GetAlignParams() local
3026 Boolean positionBased = (Boolean) (sbp->psi_matrix != NULL); in Blast_RedoAlignmentCore_MT() local
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| H A D | blast_gapalign.c | 3219 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetOffsetsForGappedAlignment() local
3365 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetStartForGappedAlignment() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/core/ |
| H A D | blast_gapalign.h | 70 Boolean positionBased; /**< Is this PSI-BLAST? */ member
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| /dports/biology/diamond/diamond-2.0.13/src/stats/ |
| H A D | cbs.h | 87 int positionBased; /**< is the matrix position-based */ member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_kappa.c | 2010 Boolean positionBased) in s_SavedParametersNew()
2063 Boolean positionBased) in s_RecordInitialSearch()
2150 Boolean positionBased, in s_RestoreSearch()
2424 Boolean positionBased = (Boolean) (context->sbp->psi_matrix != NULL); in s_GetAlignParams() local
3032 Boolean positionBased = (Boolean) (sbp->psi_matrix != NULL); in Blast_RedoAlignmentCore_MT() local
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| H A D | blast_gapalign.c | 3238 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetOffsetsForGappedAlignment() local
3384 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetStartForGappedAlignment() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_kappa.c | 2010 Boolean positionBased) in s_SavedParametersNew()
2063 Boolean positionBased) in s_RecordInitialSearch()
2150 Boolean positionBased, in s_RestoreSearch()
2424 Boolean positionBased = (Boolean) (context->sbp->psi_matrix != NULL); in s_GetAlignParams() local
3032 Boolean positionBased = (Boolean) (sbp->psi_matrix != NULL); in Blast_RedoAlignmentCore_MT() local
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| H A D | blast_gapalign.c | 3238 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetOffsetsForGappedAlignment() local
3384 Boolean positionBased = (sbp->psi_matrix != NULL); in BlastGetStartForGappedAlignment() local
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | gapxdrop.h | 264 Boolean positionBased; member
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| H A D | kappa.c | 1853 Boolean positionBased) in Kappa_SearchParametersNew()
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| H A D | blastkar.c | 1412 BLAST_MatrixFill(BLAST_ScoreBlkPtr sbp, Boolean positionBased) in BLAST_MatrixFill()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/composition_adjustment/ |
| H A D | redo_alignment.c | 1017 int positionBased, in Blast_RedoAlignParamsNew()
1337 int positionBased = params->positionBased; in Blast_RedoOneMatchSmithWaterman() local
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| H A D | composition_adjustment.c | 978 Blast_MatrixInfoNew(int rows, int cols, int positionBased) in Blast_MatrixInfoNew()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/composition_adjustment/ |
| H A D | redo_alignment.c | 1017 int positionBased, in Blast_RedoAlignParamsNew()
1337 int positionBased = params->positionBased; in Blast_RedoOneMatchSmithWaterman() local
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| H A D | composition_adjustment.c | 978 Blast_MatrixInfoNew(int rows, int cols, int positionBased) in Blast_MatrixInfoNew()
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