| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_options.c | 572 BlastInitialWordOptionsValidate(EBlastProgramType program_number, in BlastInitialWordOptionsValidate()
711 BlastExtensionOptionsValidate(EBlastProgramType program_number, in BlastExtensionOptionsValidate()
833 BlastScoringOptionsValidate(EBlastProgramType program_number, in BlastScoringOptionsValidate()
1048 LookupTableOptionsNew(EBlastProgramType program_number, LookupTableOptions* *options) in LookupTableOptionsNew()
1100 EBlastProgramType program_number, Boolean is_megablast, in BLAST_FillLookupTableOptions()
1253 LookupTableOptionsValidate(EBlastProgramType program_number, in LookupTableOptionsValidate()
1396 Int2 BlastHitSavingOptionsNew(EBlastProgramType program_number, in BlastHitSavingOptionsNew()
1454 BlastHitSavingOptionsValidate(EBlastProgramType program_number, in BlastHitSavingOptionsValidate()
1587 Int2 BLAST_InitDefaultOptions(EBlastProgramType program_number, in BLAST_InitDefaultOptions()
1640 static Int2 s_BlastExtensionScoringOptionsValidate(EBlastProgramType program_number, in s_BlastExtensionScoringOptionsValidate()
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| H A D | blast_setup.c | 330 Blast_ScoreBlkMatrixInit(EBlastProgramType program_number, in Blast_ScoreBlkMatrixInit()
459 EBlastProgramType program_number, in BlastSetup_ScoreBlkInit()
563 Int2 BLAST_MainSetUp(EBlastProgramType program_number, in BLAST_MainSetUp()
699 Int2 BLAST_CalcEffLengths (EBlastProgramType program_number, in BLAST_CalcEffLengths()
888 BLAST_GapAlignSetUp(EBlastProgramType program_number, in BLAST_GapAlignSetUp()
994 Int2 BLAST_OneSubjectUpdateParameters(EBlastProgramType program_number, in BLAST_OneSubjectUpdateParameters()
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| H A D | blast_parameters.c | 157 BlastInitialWordParametersNew(EBlastProgramType program_number, in BlastInitialWordParametersNew()
278 BlastInitialWordParametersUpdate(EBlastProgramType program_number, in BlastInitialWordParametersUpdate()
420 Int2 BlastExtensionParametersNew(EBlastProgramType program_number, in BlastExtensionParametersNew()
592 Int2 BlastLinkHSPParametersNew(EBlastProgramType program_number, in BlastLinkHSPParametersNew()
728 BlastHitSavingParametersNew(EBlastProgramType program_number, in BlastHitSavingParametersNew()
825 BlastHitSavingParametersUpdate(EBlastProgramType program_number, in BlastHitSavingParametersUpdate()
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| H A D | blast_traceback.c | 199 s_HSPListPostTracebackUpdate(EBlastProgramType program_number, in s_HSPListPostTracebackUpdate()
257 Blast_TracebackFromHSPList(EBlastProgramType program_number, in Blast_TracebackFromHSPList()
735 s_PHITracebackFromHSPList(EBlastProgramType program_number, in s_PHITracebackFromHSPList()
814 EBlastEncoding Blast_TracebackGetEncoding(EBlastProgramType program_number) in Blast_TracebackGetEncoding()
833 const BlastQueryInfo* query_info, EBlastProgramType program_number) in s_FilterBlastResults()
1030 Int2 s_RPSComputeTraceback(EBlastProgramType program_number, in s_RPSComputeTraceback()
1308 BLAST_SetupPartialFetching(EBlastProgramType program_number, in BLAST_SetupPartialFetching()
1360 BLAST_ComputeTraceback(EBlastProgramType program_number, in BLAST_ComputeTraceback()
1418 BLAST_ComputeTraceback_MT(EBlastProgramType program_number, in BLAST_ComputeTraceback_MT()
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| H A D | blast_filter.c | 435 BlastFilteringOptionsFromString(EBlastProgramType program_number, in BlastFilteringOptionsFromString()
1016 BLAST_ComplementMaskLocations(EBlastProgramType program_number, in BLAST_ComplementMaskLocations()
1121 BlastSetUp_Filter(EBlastProgramType program_number, in BlastSetUp_Filter()
1187 EBlastProgramType program_number, in s_GetFilteringLocationsForOneContext()
1256 EBlastProgramType program_number, in BlastSetUp_GetFilteringLocations()
1345 EBlastProgramType program_number) in BlastSetUp_MaskQuery()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_options.c | 601 BlastInitialWordOptionsValidate(EBlastProgramType program_number, in BlastInitialWordOptionsValidate()
740 BlastExtensionOptionsValidate(EBlastProgramType program_number, in BlastExtensionOptionsValidate()
862 BlastScoringOptionsValidate(EBlastProgramType program_number, in BlastScoringOptionsValidate()
1077 LookupTableOptionsNew(EBlastProgramType program_number, LookupTableOptions* *options) in LookupTableOptionsNew()
1130 EBlastProgramType program_number, Boolean is_megablast, in BLAST_FillLookupTableOptions()
1284 LookupTableOptionsValidate(EBlastProgramType program_number, in LookupTableOptionsValidate()
1427 Int2 BlastHitSavingOptionsNew(EBlastProgramType program_number, in BlastHitSavingOptionsNew()
1488 BlastHitSavingOptionsValidate(EBlastProgramType program_number, in BlastHitSavingOptionsValidate()
1621 Int2 BLAST_InitDefaultOptions(EBlastProgramType program_number, in BLAST_InitDefaultOptions()
1674 static Int2 s_BlastExtensionScoringOptionsValidate(EBlastProgramType program_number, in s_BlastExtensionScoringOptionsValidate()
[all …]
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| H A D | blast_setup.c | 330 Blast_ScoreBlkMatrixInit(EBlastProgramType program_number, in Blast_ScoreBlkMatrixInit()
459 EBlastProgramType program_number, in BlastSetup_ScoreBlkInit()
563 Int2 BLAST_MainSetUp(EBlastProgramType program_number, in BLAST_MainSetUp()
699 Int2 BLAST_CalcEffLengths (EBlastProgramType program_number, in BLAST_CalcEffLengths()
888 BLAST_GapAlignSetUp(EBlastProgramType program_number, in BLAST_GapAlignSetUp()
994 Int2 BLAST_OneSubjectUpdateParameters(EBlastProgramType program_number, in BLAST_OneSubjectUpdateParameters()
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| H A D | blast_parameters.c | 157 BlastInitialWordParametersNew(EBlastProgramType program_number, in BlastInitialWordParametersNew()
278 BlastInitialWordParametersUpdate(EBlastProgramType program_number, in BlastInitialWordParametersUpdate()
420 Int2 BlastExtensionParametersNew(EBlastProgramType program_number, in BlastExtensionParametersNew()
596 Int2 BlastLinkHSPParametersNew(EBlastProgramType program_number, in BlastLinkHSPParametersNew()
732 BlastHitSavingParametersNew(EBlastProgramType program_number, in BlastHitSavingParametersNew()
829 BlastHitSavingParametersUpdate(EBlastProgramType program_number, in BlastHitSavingParametersUpdate()
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| H A D | blast_traceback.c | 199 s_HSPListPostTracebackUpdate(EBlastProgramType program_number, in s_HSPListPostTracebackUpdate()
259 Blast_TracebackFromHSPList(EBlastProgramType program_number, in Blast_TracebackFromHSPList()
740 s_PHITracebackFromHSPList(EBlastProgramType program_number, in s_PHITracebackFromHSPList()
819 EBlastEncoding Blast_TracebackGetEncoding(EBlastProgramType program_number) in Blast_TracebackGetEncoding()
838 const BlastQueryInfo* query_info, EBlastProgramType program_number) in s_FilterBlastResults()
1046 Int2 s_RPSComputeTraceback(EBlastProgramType program_number, in s_RPSComputeTraceback()
1324 BLAST_SetupPartialFetching(EBlastProgramType program_number, in BLAST_SetupPartialFetching()
1378 BLAST_ComputeTraceback(EBlastProgramType program_number, in BLAST_ComputeTraceback()
1436 BLAST_ComputeTraceback_MT(EBlastProgramType program_number, in BLAST_ComputeTraceback_MT()
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| H A D | blast_filter.c | 436 BlastFilteringOptionsFromString(EBlastProgramType program_number, in BlastFilteringOptionsFromString()
1017 BLAST_ComplementMaskLocations(EBlastProgramType program_number, in BLAST_ComplementMaskLocations()
1122 BlastSetUp_Filter(EBlastProgramType program_number, in BlastSetUp_Filter()
1195 EBlastProgramType program_number, in s_GetFilteringLocationsForOneContext()
1264 EBlastProgramType program_number, in BlastSetUp_GetFilteringLocations()
1353 EBlastProgramType program_number) in BlastSetUp_MaskQuery()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_options.c | 601 BlastInitialWordOptionsValidate(EBlastProgramType program_number, in BlastInitialWordOptionsValidate()
740 BlastExtensionOptionsValidate(EBlastProgramType program_number, in BlastExtensionOptionsValidate()
862 BlastScoringOptionsValidate(EBlastProgramType program_number, in BlastScoringOptionsValidate()
1077 LookupTableOptionsNew(EBlastProgramType program_number, LookupTableOptions* *options) in LookupTableOptionsNew()
1130 EBlastProgramType program_number, Boolean is_megablast, in BLAST_FillLookupTableOptions()
1284 LookupTableOptionsValidate(EBlastProgramType program_number, in LookupTableOptionsValidate()
1427 Int2 BlastHitSavingOptionsNew(EBlastProgramType program_number, in BlastHitSavingOptionsNew()
1488 BlastHitSavingOptionsValidate(EBlastProgramType program_number, in BlastHitSavingOptionsValidate()
1621 Int2 BLAST_InitDefaultOptions(EBlastProgramType program_number, in BLAST_InitDefaultOptions()
1674 static Int2 s_BlastExtensionScoringOptionsValidate(EBlastProgramType program_number, in s_BlastExtensionScoringOptionsValidate()
[all …]
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| H A D | blast_setup.c | 330 Blast_ScoreBlkMatrixInit(EBlastProgramType program_number, in Blast_ScoreBlkMatrixInit()
459 EBlastProgramType program_number, in BlastSetup_ScoreBlkInit()
563 Int2 BLAST_MainSetUp(EBlastProgramType program_number, in BLAST_MainSetUp()
699 Int2 BLAST_CalcEffLengths (EBlastProgramType program_number, in BLAST_CalcEffLengths()
888 BLAST_GapAlignSetUp(EBlastProgramType program_number, in BLAST_GapAlignSetUp()
994 Int2 BLAST_OneSubjectUpdateParameters(EBlastProgramType program_number, in BLAST_OneSubjectUpdateParameters()
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| H A D | blast_parameters.c | 157 BlastInitialWordParametersNew(EBlastProgramType program_number, in BlastInitialWordParametersNew()
278 BlastInitialWordParametersUpdate(EBlastProgramType program_number, in BlastInitialWordParametersUpdate()
420 Int2 BlastExtensionParametersNew(EBlastProgramType program_number, in BlastExtensionParametersNew()
596 Int2 BlastLinkHSPParametersNew(EBlastProgramType program_number, in BlastLinkHSPParametersNew()
732 BlastHitSavingParametersNew(EBlastProgramType program_number, in BlastHitSavingParametersNew()
829 BlastHitSavingParametersUpdate(EBlastProgramType program_number, in BlastHitSavingParametersUpdate()
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| H A D | blast_traceback.c | 199 s_HSPListPostTracebackUpdate(EBlastProgramType program_number, in s_HSPListPostTracebackUpdate()
259 Blast_TracebackFromHSPList(EBlastProgramType program_number, in Blast_TracebackFromHSPList()
740 s_PHITracebackFromHSPList(EBlastProgramType program_number, in s_PHITracebackFromHSPList()
819 EBlastEncoding Blast_TracebackGetEncoding(EBlastProgramType program_number) in Blast_TracebackGetEncoding()
838 const BlastQueryInfo* query_info, EBlastProgramType program_number) in s_FilterBlastResults()
1046 Int2 s_RPSComputeTraceback(EBlastProgramType program_number, in s_RPSComputeTraceback()
1324 BLAST_SetupPartialFetching(EBlastProgramType program_number, in BLAST_SetupPartialFetching()
1378 BLAST_ComputeTraceback(EBlastProgramType program_number, in BLAST_ComputeTraceback()
1436 BLAST_ComputeTraceback_MT(EBlastProgramType program_number, in BLAST_ComputeTraceback_MT()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_returns.c | 73 Blast_GetParametersBuffer(EBlastProgramType program_number, in Blast_GetParametersBuffer()
350 s_SummaryDBStatsFill(EBlastProgramType program_number, in s_SummaryDBStatsFill()
468 Blast_SearchParamsFill(EBlastProgramType program_number, in Blast_SearchParamsFill()
555 Int2 Blast_SummaryReturnFill(EBlastProgramType program_number, in Blast_SummaryReturnFill()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | rmblast_blasthits_unit_test.cpp | 113 EBlastProgramType program_number = eBlastTypeBlastn; in BOOST_AUTO_TEST_CASE() local
142 EBlastProgramType program_number = eBlastTypeBlastn; in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | rmblast_blasthits_unit_test.cpp | 113 EBlastProgramType program_number = eBlastTypeBlastn; in BOOST_AUTO_TEST_CASE() local
142 EBlastProgramType program_number = eBlastTypeBlastn; in BOOST_AUTO_TEST_CASE() local
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| /dports/multimedia/libmediainfo/MediaInfo_CLI_GNU_FromSource/MediaInfoLib/Source/MediaInfo/Duplicate/ |
| H A D | File__Duplicate_MpegTs.cpp | 88 const int16u program_number=Ztring(Value.substr(15, std::string::npos)).To_int16u(); in Configure() local
128 const int16u program_number=Ztring(Value).To_int16u(); in Configure() local
176 const int16u program_number =CC2(FromTS.Buffer+FromTS.Offset+0); in Manage_PAT() local
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| /dports/multimedia/mediainfo/MediaInfo_CLI_GNU_FromSource/MediaInfoLib/Source/MediaInfo/Duplicate/ |
| H A D | File__Duplicate_MpegTs.cpp | 88 const int16u program_number=Ztring(Value.substr(15, std::string::npos)).To_int16u(); in Configure() local
128 const int16u program_number=Ztring(Value).To_int16u(); in Configure() local
176 const int16u program_number =CC2(FromTS.Buffer+FromTS.Offset+0); in Manage_PAT() local
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| /dports/multimedia/libzen/MediaInfo_CLI_GNU_FromSource/MediaInfoLib/Source/MediaInfo/Duplicate/ |
| H A D | File__Duplicate_MpegTs.cpp | 88 const int16u program_number=Ztring(Value.substr(15, std::string::npos)).To_int16u(); in Configure() local
128 const int16u program_number=Ztring(Value).To_int16u(); in Configure() local
176 const int16u program_number =CC2(FromTS.Buffer+FromTS.Offset+0); in Manage_PAT() local
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| /dports/net/liveMedia/live/liveMedia/ |
| H A D | MPEG2TransportStreamParser.hh | 62 u_int16_t program_number; member in PIDState_PMT
72 u_int16_t program_number; member in PIDState_STREAM
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| /dports/multimedia/py-pretty_midi/pretty_midi-0.2.9/pretty_midi/ |
| H A D | utilities.py | 450 def program_to_instrument_name(program_number): argument
516 def program_to_instrument_class(program_number): argument
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| /dports/multimedia/tstools/tstools-1.11/ |
| H A D | ts2ps.c | 136 uint16_t program_number, in extract_data()
314 uint16_t program_number = 0; in main() local
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| /dports/multimedia/ccextractor/ccextractor-0.85/src/lib_ccx/ |
| H A D | ts_tables.c | 64 int update_pinfo(struct ccx_demuxer *ctx, int pid, int program_number) in update_pinfo()
102 uint16_t program_number; in parse_PMT() local
639 unsigned program_number = ((payload_start[i] << 8) in parse_PAT() local
650 unsigned program_number = ((payload_start[i] << 8) in parse_PAT() local
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| /dports/games/scummvm/scummvm-2.5.1/engines/ultima/nuvie/sound/decoder/ |
| H A D | adlib_sfx_stream.cpp | 29 …ration *cfg, int rate, uint8 channel, sint8 note, uint8 velocity, uint8 program_number, uint32 d) { in AdLibSfxStream()
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