Searched defs:qryseq (Results 1 – 4 of 4) sorted by relevance
100 const AjPSeq qryseq; in main() local492 const AjPSeq qryseq, in wordfinder_findstartpoints()
355 const AjPSeq trgseq, const AjPSeq qryseq, in supermatcher_findendpoints()
1640 static ajint wordRabinKarpCmp(const void *trgseq, const void *qryseq) in wordRabinKarpCmp()
1672 const AjPSeq qryseq; in alignWriteSam() local6142 static ajint alignCigar(const AjPSeq qryseq, const AjPSeq refseq, in alignCigar()