| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_message_api.c | 124 SeqLoc* s_Context2SeqLoc(int context, SeqLoc* query_slp, const BlastQueryInfo* query_info) in s_Context2SeqLoc()
182 SBlastMessage* Blast_MessageToSBlastMessage(const Blast_Message* old, SeqLoc* query_slp, const Blas… in Blast_MessageToSBlastMessage()
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| H A D | blast_tabular.h | 81 SeqLoc* query_slp; /**< Source of query sequences identifiers */ member
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| H A D | twoseq_api.c | 244 SeqLocPtr query_slp = NULL; /* sequence variables */ in BLAST_TwoSequencesSearch() local
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| H A D | blast_seq.c | 150 SeqLocPtr query_slp, mask_slp; in BlastMaskLocFromSeqLoc() local
721 SeqLocPtr query_slp, const QuerySetUpOptions* query_options, in BLAST_SetUpQuery()
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| H A D | blast_format.c | 735 SeqLoc* query_slp, SeqLoc* mask_loc_head, in BLAST_FormatResults()
1060 Int2 PHIBlastFormatResults(ValNode* phivnps, SeqLoc* query_slp, in PHIBlastFormatResults()
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| H A D | blast_input.c | 57 SeqLoc** lcase_mask, SeqLocPtr* query_slp, in BLAST_GetQuerySeqLoc()
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| H A D | blast_seqalign.c | 1290 BlastHSPResults** results_ptr, SeqLocPtr query_slp, in BLAST_ResultsToSeqAlign()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blfmtutl.c | 868 SeqLocPtr query_slp, CharPtr blast_program, in PrintTabularOutputHeader()
1002 SeqLocPtr query_slp, Int4 num_alignments, in BlastPrintTabulatedResults()
1014 SeqLocPtr query_slp, Int4 num_alignments, in BlastPrintTabulatedResultsEx()
1026 SeqLocPtr query_slp, Int4 num_alignments, CharPtr blast_program, in BlastPrintTabularResults()
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| H A D | mblast.c | 993 MegaBlastSetUpSearchWithReadDbInternal (SeqLocPtr query_slp, BioseqPtr in MegaBlastSetUpSearchWithReadDbInternal()
1152 query_slp, BioseqPtr query_bsp, CharPtr in MegaBlastSetUpSearchInternalByLoc()
1713 MegaBlastGetFirstAndLastContext(CharPtr prog_name, SeqLocPtr query_slp, Int2Ptr first_context, Int2… in MegaBlastGetFirstAndLastContext()
1754 BlastFillQueryOffsets(BlastSearchBlkPtr search, SeqLocPtr query_slp, in BlastFillQueryOffsets()
3955 SeqLocPtr query_slp = NULL; in PrintMaskedSequence() local
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| H A D | blast.c | 4183 Int2 LIBCALL BLASTSetUpSearchInternalByLoc (BlastSearchBlkPtr search, SeqLocPtr query_slp, BioseqPt… in BLASTSetUpSearchInternalByLoc()
5569 BlastGetFirstAndLastContext(CharPtr prog_name, SeqLocPtr query_slp, Int2Ptr first_context, Int2Ptr … in BlastGetFirstAndLastContext()
5651 BLASTSetUpSearchWithReadDbInternalEx (SeqLocPtr query_slp, BioseqPtr query_bsp, in BLASTSetUpSearchWithReadDbInternalEx()
5677 BLASTSetUpSearchWithReadDbInternal (SeqLocPtr query_slp, BioseqPtr query_bsp, CharPtr prog_name, In… in BLASTSetUpSearchWithReadDbInternal()
5714 BLASTSetUpSearchWithReadDbInternalMult (SeqLocPtr query_slp, BioseqPtr query_bsp, CharPtr prog_name… in BLASTSetUpSearchWithReadDbInternalMult()
5859 BLASTSetUpSearchByLocWithReadDb(SeqLocPtr query_slp, CharPtr prog_name, Int4 qlen, CharPtr dbname, … in BLASTSetUpSearchByLocWithReadDb()
5868 BLASTSetUpSearchByLocWithReadDbEx(SeqLocPtr query_slp, CharPtr prog_name, Int4 qlen, CharPtr dbname… in BLASTSetUpSearchByLocWithReadDbEx()
5876 BLASTSetUpSearchEx (SeqLocPtr query_slp, BioseqPtr query_bsp, CharPtr prog_name, Int4 qlen, Int8 db… in BLASTSetUpSearchEx()
6006 BLASTSetUpSearchByLoc (SeqLocPtr query_slp, CharPtr prog_name, Int4 qlen, Int8 dblen, BlastAllWordP… in BLASTSetUpSearchByLoc()
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| H A D | rpsutil.h | 191 SeqLocPtr query_slp; /* Created from the above 2 fields, for member
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| H A D | blastconcat.c | 130 SeqLocPtr query_slp, /* Sequence location corresponding to the whole fake_bsp_arr[0] */ in GetNumSpacers() local
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| H A D | rpsutil.c | 2319 SeqLocPtr query_lcase_mask = NULL, query_slp = NULL; in RPSEngineThread() local
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| H A D | blastdef.h | 1996 SeqLocPtr query_slp; member
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| H A D | blastutl.c | 3529 SeqLocPtr query_slp, subject_slp; in BlastTwoSequencesByLocWithCallback() local
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | rpsblast.c | 679 SeqLoc* query_slp = NULL; in Main() local
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| H A D | blast_driver.c | 464 SeqLoc* query_slp = NULL; in Nlm_Main() local
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| H A D | blastall.c | 1560 SeqLoc* query_slp = NULL; in Main_new() local
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| H A D | megablast.c | 2121 SeqLoc* query_slp = NULL; in Main_new() local
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| /dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/ |
| H A D | wwwblast.c | 831 SeqLocPtr query_slp, query_lcase_mask, lcase_mask; in WWWBlastDoSearch() local
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| H A D | wwwblast.h | 182 SeqLocPtr query_slp; /* For multiple query search */ member
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
| H A D | cddposutil.c | 1236 (BlastSearchBlkPtr search, SeqLocPtr query_slp, BioseqPtr query_bsp, in CddSetUpSearchInternalByLoc()
1982 BlastSearchBlkPtr LIBCALL CddSetUpSearchWithReadDb(SeqLocPtr query_slp, in CddSetUpSearchWithReadDb()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | salpstat.c | 1715 NLM_EXTERN Int4 LIBCALL SeqAlignOverlapLenByLoc(SeqAlignPtr sap,SeqLocPtr query_slp,SeqLocPtr subje… in SeqAlignOverlapLenByLoc()
1836 NLM_EXTERN FloatHi LIBCALL AlignabilityByLoc(SeqAlignPtr sap,SeqLocPtr query_slp, SeqLocPtr subject… in AlignabilityByLoc()
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