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Searched defs:rate_matrix (Results 1 – 6 of 6) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/model/
H A Dmodelmarkov.h514 double *rate_matrix; variable
H A Dmodelgtr.cpp387 double **rate_matrix = (double**) new double[num_states]; in getQMatrix() local
656 double **rate_matrix = new double*[num_states]; in decomposeRateMatrix() local
H A Dmodelmarkov.cpp741 double **rate_matrix = (double**) new double[num_states]; in getQMatrix() local
1375 double **rate_matrix = new double*[num_states]; in decomposeRateMatrixRev() local
/dports/biology/iqtree/IQ-TREE-2.0.6/utils/
H A Deigendecomposition.cpp313 double *rate_matrix, double *state_freq, double *eval, double *eval_imag, in eigensystem_nonrev()
/dports/biology/iqtree/IQ-TREE-2.0.6/obsolete/
H A Dngs.cpp825 double *rate_matrix = new double[aln.num_states * aln.num_states]; in reportNGSAnalysis() local
/dports/biology/hyphy/hyphy-2.5.33/src/core/
H A Dbatchlanruntime.cpp3387 _Variable* rate_matrix = (_Variable*)source_object; in HandleGetString() local