Searched defs:rdoff (Results 1 – 15 of 15) sorted by relevance
| /dports/databases/tarantool-c/tarantool-c-0ab37e8/include/tarantool/ |
| H A D | tnt_buf.h | 50 size_t rdoff; /*!< read offset */ member
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| /dports/benchmarks/nosqlbench/nosqlbench-0.0.20151214/third_party/tarantool-c/include/tarantool/ |
| H A D | tnt_buf.h | 50 size_t rdoff; /*!< read offset */ member
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| /dports/devel/plan9port/plan9port-1f098efb7370a0b28306d10681e21883fb1c1507/src/cmd/9660/ |
| H A D | path.c | 89 ulong bk, end, i, *len, n, rdoff, start; in writepathtable() local
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| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_sw_driver.h | 149 uint32_t rdoff; member
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| H A D | aligner_sw_driver.cpp | 522 uint32_t offidx = 0, rdoff = 0, seedlen = 0; in prioritizeSATups() local
889 uint32_t rdoff = satpos_[i].pos.rdoff; in extendSeeds() local
1578 uint32_t rdoff = satpos_[i].pos.rdoff; in extendSeedsPaired() local
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| H A D | aligner_result.cpp | 572 size_t rdoff = trimLS; in init() local
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| H A D | aligner_swsse_loc_i16.cpp | 1546 size_t rdoff = i; in gatherCellsNucleotidesLocalSseI16() local
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| H A D | aligner_swsse_loc_u8.cpp | 1549 size_t rdoff = i; in gatherCellsNucleotidesLocalSseU8() local
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| H A D | aligner_result.h | 1645 size_t rdoff; // row member
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_sw_driver.h | 158 index_t rdoff; member
1045 index_t offidx = 0, rdoff = 0, seedlen = 0; in prioritizeSATups() local
1414 index_t rdoff = satpos_[i].pos.rdoff; in extendSeeds() local
2107 index_t rdoff = satpos_[i].pos.rdoff; in extendSeedsPaired() local
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| H A D | hi_aligner.h | 826 index_t rdoff() const { return _rdoff; } in rdoff() function
2240 index_t rdoff, in adjustWithALT()
5153 index_t rdoff = hit._len - partialHit._bwoff - len; variable
5239 index_t rdoff = 0; in getRepeatHits() local
5786 index_t rdoff, in getGenomeCoords()
5872 index_t rdoff, in getGenomeCoords_local()
6757 index_t rdoff, in localGFMSearch()
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| H A D | aligner_result.cpp | 677 size_t rdoff = trimLS; in init() local
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| H A D | aligner_swsse_loc_i16.cpp | 1546 size_t rdoff = i; in gatherCellsNucleotidesLocalSseI16() local
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| H A D | aligner_swsse_loc_u8.cpp | 1546 size_t rdoff = i; in gatherCellsNucleotidesLocalSseU8() local
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| H A D | aligner_result.h | 2012 size_t rdoff; // row member
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