| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
| H A D | ReadMetadataTest.java | 50 final ReadMetadata readMetadata = in testEverything() local
68 final ReadMetadata readMetadata = composeTestReadMetadata(); in testMeanAndStdev() local
87 final ReadMetadata readMetadata = composeTestReadMetadata(); in serializationTest() local
109 private void assertEquals(ReadMetadata readMetadata, ReadMetadata readMetadata2) { in assertEquals()
131 final ReadMetadata readMetadata = composeTestReadMetadata(); in testStandaloneDeserializationOfTextFile() local
146 final ReadMetadata readMetadata = composeTestReadMetadata(); in testStandaloneSerialization() local
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| H A D | QNameFinderTest.java | 30 …final ReadMetadata readMetadata = new ReadMetadata(crossContigIgnoreSet, header, LIBRARY_STATISTIC… in testHighDepthRegionFiltering() local
68 …final ReadMetadata readMetadata = new ReadMetadata(crossContigIgnoreSet, header, LIBRARY_STATISTIC… in testReadWithNegativeUnclippedStart() local
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| H A D | KSWindowFinderUnitTest.java | 40 …final ReadMetadata readMetadata = new ReadMetadata(crossContigIgnoreSet, header, stats, null, 4L, … in testContigCrossing() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
| H A D | EvidenceOverlapChecker.java | 17 private final ReadMetadata readMetadata; field in EvidenceOverlapChecker
20 …enceOverlapChecker(final Iterator<BreakpointEvidence> evidenceItr, final ReadMetadata readMetadata, in EvidenceOverlapChecker()
95 private final ReadMetadata readMetadata; field in EvidenceOverlapChecker.OverlapAndCoherenceIterator
105 final ReadMetadata readMetadata, in OverlapAndCoherenceIterator()
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| H A D | FindBreakpointEvidenceSpark.java | 215 final ReadMetadata readMetadata; field in FindBreakpointEvidenceSpark.AssembledEvidenceResults
220 public AssembledEvidenceResults(final ReadMetadata readMetadata, in AssembledEvidenceResults()
257 final ReadMetadata readMetadata = in buildMetadata() local
275 final ReadMetadata readMetadata, in getMappedQNamesSet()
372 final ReadMetadata readMetadata; field in FindBreakpointEvidenceSpark.EvidenceScanResults
377 public EvidenceScanResults(final ReadMetadata readMetadata, in EvidenceScanResults()
494 final ReadMetadata readMetadata, in addAssemblyQNames()
529 final ReadMetadata readMetadata, in getKmerAndIntervalsSet()
625 final ReadMetadata readMetadata, in removeUbiquitousKmers()
706 final ReadMetadata readMetadata, in getKmerIntervals()
[all …]
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| H A D | EvidenceTargetLinkClusterer.java | 21 private final ReadMetadata readMetadata; field in EvidenceTargetLinkClusterer
24 public EvidenceTargetLinkClusterer(final ReadMetadata readMetadata, final int minEvidenceMapq) { in EvidenceTargetLinkClusterer()
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| H A D | KSWindowFinder.java | 32 protected final ReadMetadata readMetadata; field in KSWindowFinder
54 public KSWindowFinder( final ReadMetadata readMetadata, final SVReadFilter filter ) { in KSWindowFinder()
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| H A D | BreakpointDensityFilter.java | 18 private final ReadMetadata readMetadata; field in BreakpointDensityFilter
28 final ReadMetadata readMetadata, in BreakpointDensityFilter()
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| H A D | EvidenceTargetLink.java | 80 public String toBedpeString(ReadMetadata readMetadata) { in toBedpeString()
90 private String getId(final ReadMetadata readMetadata) { in getId()
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| H A D | CalcMetadataSpark.java | 79 final ReadMetadata readMetadata = in runTool() local
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| H A D | ReadClassifier.java | 22 private final ReadMetadata readMetadata; field in ReadClassifier
29 public ReadClassifier(final ReadMetadata readMetadata, in ReadClassifier()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/discovery/ |
| H A D | SvDiscoveryInputMetaData.java | 79 private final ReadMetadata readMetadata; field in SvDiscoveryInputMetaData.SampleSpecificData
88 final ReadMetadata readMetadata, in SampleSpecificData()
139 final ReadMetadata readMetadata, in SvDiscoveryInputMetaData()
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| /dports/sysutils/istio/istio-1.6.7/pkg/config/schema/codegen/tools/ |
| H A D | staticinit.main.go | 72 func readMetadata(path string) (*schema.Metadata, error) { func
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/ |
| H A D | InsertSizeDistributionUnitTest.java | 36 final ReadMetadata readMetadata = ReadMetadataTest.composeTestReadMetadata(); in testFromSerializedMetaData() local
53 final ReadMetadata readMetadata = ReadMetadataTest.composeTestReadMetadata(); in testFromTextMetaData() local
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| /dports/devel/spark/spark-2.1.1/sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/ |
| H A D | StreamMetadataSuite.scala | 36 val readMetadata = StreamMetadata.read(file, hadoopConf) constant
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| /dports/graphics/lightzone/LightZone-4.1.8-3-g36e87773/lightcrafts/src/com/lightcrafts/image/types/ |
| H A D | MOSImageType.java | 43 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in MOSImageType
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| H A D | FFFImageType.java | 44 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in FFFImageType
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| H A D | PanasonicRawImageType.java | 68 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in PanasonicRawImageType
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| H A D | SR2ImageType.java | 66 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in SR2ImageType
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| H A D | KDCImageType.java | 61 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in KDCImageType
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| H A D | ARWImageType.java | 81 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in ARWImageType
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| H A D | ERFImageType.java | 76 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in ERFImageType
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| H A D | DCRImageType.java | 65 public void readMetadata( ImageInfo imageInfo ) in readMetadata() method in DCRImageType
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| /dports/graphics/digikam/digikam-7.4.0/core/dplugins/generic/metadata/metadataedit/iptc/ |
| H A D | iptcsubjects.cpp | 111 void IPTCSubjects::readMetadata(const DMetadata& meta) in readMetadata() function in DigikamGenericMetadataEditPlugin::IPTCSubjects
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| /dports/graphics/digikam/digikam-7.4.0/core/dplugins/generic/metadata/metadataedit/xmp/ |
| H A D | xmpsubjects.cpp | 94 void XMPSubjects::readMetadata(const DMetadata& meta) in readMetadata() function in DigikamGenericMetadataEditPlugin::XMPSubjects
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