| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/bam/ |
| H A D | BamIndex.cpp | 218 bool BamIndex::getChunksForRegion(int32_t refID, int32_t start, int32_t end, in getChunksForRegion()
337 bool BamIndex::getReferenceMinMax(int32_t refID, in getReferenceMinMax()
355 int32_t BamIndex::getNumMappedReads(int32_t refID) in getNumMappedReads()
377 int32_t BamIndex::getNumUnMappedReads(int32_t refID) in getNumUnMappedReads()
398 void BamIndex::printIndex(int32_t refID, bool summary) in printIndex()
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| H A D | PosList.cpp | 42 void PosList::addPosition(int refID, int refPosition) in addPosition()
81 bool PosList::hasPosition(int refID, int refPosition) in hasPosition()
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| H A D | SamFile.cpp | 696 bool SamFile::SetReadSection(int32_t refID) in SetReadSection()
713 bool SamFile::SetReadSection(int32_t refID, int32_t start, int32_t end, in SetReadSection()
803 int32_t SamFile::getNumMappedReadsFromIndex(int32_t refID) in getNumMappedReadsFromIndex()
818 int32_t SamFile::getNumUnMappedReadsFromIndex(int32_t refID) in getNumUnMappedReadsFromIndex()
843 int32_t refID = BamIndex::REF_ID_UNMAPPED; in getNumMappedReadsFromIndex() local
865 int32_t refID = BamIndex::REF_ID_UNMAPPED; in getNumUnMappedReadsFromIndex() local
1073 int32_t refID = record.getReferenceID(); in validateSortOrder() local
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| H A D | Pileup.h | 299 int refID = record.getReferenceID(); in processAlignment() local
322 int refID = record.getReferenceID(); in processAlignmentRegion() local
421 void Pileup<PILEUP_TYPE, FUNC_CLASS>::flushPileup(int refID, int position) in flushPileup()
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| /dports/www/grafana8/grafana-8.3.6/pkg/expr/ |
| H A D | commands.go | 23 refID string member
28 func NewMathCommand(refID, expr string) (*MathCommand, error) { argument
74 refID string member
78 func NewReduceCommand(refID, reducer, varToReduce string) *ReduceCommand { argument
142 refID string member
146 func NewResampleCommand(refID, rawWindow, varToResample string, downsampler string, upsampler strin… argument
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| /dports/cad/sumo/sumo-1.2.0/tools/traci/ |
| H A D | domain.py | 49 def add(self, refID, varID, data): argument
54 def get(self, refID=None): argument
59 def addContext(self, refID, domain, objID, varID=None, data=None): argument
68 def getContext(self, refID=None): argument
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| /dports/biology/bbmap/bbmap/current/jasper/ |
| H A D | Comparison.java | 38 int refID; field in Comparison
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| /dports/www/grafana8/grafana-8.3.6/pkg/expr/mathexp/ |
| H A D | reduce.go | 73 func (s Series) Reduce(refID, rFunc string) (Number, error) { argument
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| /dports/biology/bamutil/bamUtil-1.0.15/src/ |
| H A D | DumpIndex.cpp | 59 int refID = UNSPECIFIED_INT; in execute() local
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| H A D | GapInfo.cpp | 182 int32_t refID = samRecord.getReferenceID(); in processFile() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/ |
| H A D | analysis.h | 33 const char *refID; member
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| /dports/biology/canu/canu-2.2/src/bogart/ |
| H A D | AS_BAT_PlaceReadUsingOverlaps.H | 37 uint32 refID = 0; // Read ID of the overlapping read were placed with. variable
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| /dports/graphics/quesa/quesa-1.8/Source/FileFormats/Readers/3DMF/ |
| H A D | E3FFR_3DMF_Text.c | 99 TQ3Uns32 refID; member
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
| H A D | IndexBase.cpp | 185 bool IndexBase::getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, in getMinOffsetFromLinearIndex()
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| H A D | Tabix.cpp | 222 int refID = 0; in getStartPos() local
|
| /dports/www/gitea/gitea-1.16.5/modules/git/ |
| H A D | submodule.go | 30 refID string member
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| /dports/net/minidlna/minidlna-4f6a473/ |
| H A D | scanner.c | 90 insert_container(const char *item, const char *rootParent, const char *refID, const char *class, in insert_container()
141 insert_containers(const char *name, const char *path, const char *refID, const char *class, int64_t… in insert_containers()
398 char id_buf[64], parent_buf[64], refID[64]; in insert_directory() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | samextract.h | 43 i32 refID; member
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | samextract.h | 43 i32 refID; member
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| /dports/www/domoticz/domoticz-2020.2/hardware/ |
| H A D | LogitechMediaServer.h | 30 int refID; member
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| /dports/biology/bamtools/bamtools-2.5.2/src/api/ |
| H A D | BamReader.cpp | 251 bool BamReader::Jump(int refID, int position) in Jump()
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| H A D | BamMultiReader.cpp | 263 bool BamMultiReader::Jump(int refID, int position) in Jump()
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| /dports/sysutils/node_exporter/node_exporter-1.2.2/vendor/github.com/beevik/ntp/ |
| H A D | ntp_test.go | 17 refID = 0x58585858 // 'XXXX' const
|
| /dports/www/grafana8/grafana-8.3.6/pkg/expr/classic/ |
| H A D | classic.go | 17 refID string member
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| /dports/www/lynx-current/lynx2.9.0dev.9/WWW/Library/Implementation/ |
| H A D | HTVMS_WaisUI.c | 76 any refID; in generate_search_apdu() local
130 any refID; in generate_retrieval_apdu() local
430 any *refID, in makeInitResponseAPDU()
542 any *refID = NULL; in readInitResponseAPDU() local
672 any *refID, in makeSearchAPDU()
841 any *refID, in makeSearchResponseAPDU()
929 any *refID = NULL; in readSearchResponseAPDU() local
|