| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/bedFile/ |
| H A D | bedFile.cpp | 339 vector<BED> &hits, bool sameStrand, in allHits()
399 bool sameStrand, bool diffStrand, float overlapFraction, bool reciprocal) { in anyHits()
457 void BedFile::countHits(const BED &a, bool sameStrand, bool diffStrand, bool countsOnly) { in countHits()
513 void BedFile::countSplitHits(const vector<BED> &bedBlocks, bool sameStrand, bool diffStrand, bool c… in countSplitHits()
589 void BedFile::countListHits(const BED &a, int index, bool sameStrand, bool diffStrand) { in countListHits()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/FileRecordTools/Records/ |
| H A D | Record.cpp | 132 bool sameStrand, in intersects()
151 bool sameStrand, in sameChromIntersects()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/annotateBed/ |
| H A D | annotateMain.cpp | 35 bool sameStrand = false; in annotate_main() local
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| H A D | annotateBed.cpp | 17 …const vector<string> &annoTitles, bool sameStrand, bool diffStrand, bool reportCounts, bool report… in BedAnnotate()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/pairToBed/ |
| H A D | pairToBedMain.cpp | 44 bool sameStrand = false; in pairtobed_main() local
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| H A D | pairToBed.cpp | 37 string searchType, bool sameStrand, bool diffStrand, bool bamInput, in BedIntersectPE()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/multiBamCov/ |
| H A D | multiBamCovMain.cpp | 44 bool sameStrand = false; in multibamcov_main() local
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| H A D | multiBamCov.cpp | 23 bool obeySplits, bool sameStrand, in MultiCovBam()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/chromsweep/ |
| H A D | chromsweep.cpp | 22 bool sameStrand, bool diffStrand, in ChromSweep()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/tagBam/ |
| H A D | tagBamMain.cpp | 42 bool sameStrand = false; in tagbam_main() local
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| H A D | tagBam.cpp | 19 bool sameStrand, bool diffStrand, float overlapFraction): in TagBam()
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| /dports/biology/bbmap/bbmap/current/consensus/ |
| H A D | Lilypad.java | 869 public boolean sameStrand(){ in sameStrand() method in Lilypad.Edge
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| /dports/biology/py-deeptoolsintervals/deeptoolsintervals-0.1.9/deeptoolsintervals/tree/ |
| H A D | findOverlaps.c | 54 static inline int sameStrand(int strand, GTFentry *e) { in sameStrand() function
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| /dports/biology/bbmap/bbmap/current/align2/ |
| H A D | RandomReads3.java | 1532 int minMiddle, int maxMiddle, boolean sameStrand, in makeRead()
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