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Searched defs:scoreFromDel (Results 1 – 7 of 7) sorted by relevance

/dports/biology/bbmap/bbmap/current/aligner/
H A DMultiStateAligner9PacBioAdapter3.java752 final int scoreFromDel=packed[MODE_DEL][row-1][col-1]&SCOREMASK; local
780 final int scoreFromDel=packed[MODE_DEL][row][col-1]&SCOREMASK; local
889 final int scoreFromDel=packed[MODE_DEL][row-1][col-1]&SCOREMASK; in score() local
901 final int scoreFromDel=packed[MODE_DEL][row][col-1]&SCOREMASK; in score() local
H A DMultiStateAligner9PacBioAdapter.java746 final int scoreFromDel=packed[MODE_DEL][row-1][col-1]&SCOREMASK; local
H A DSingleStateAlignerFlat2_1D.java103 final int scoreFromDel=get(row, col-1); in fillUnlimited()
H A DMultiStateAligner9PacBioAdapter2.java856 final int scoreFromDel=packed[MODE_DEL][row][col-1]&SCOREMASK; local
H A DSingleStateAlignerFlatFloat.java201 final float scoreFromDel=packed[row][col-1]; in getState() local
/dports/biology/bbmap/bbmap/current/align2/
H A DMultiStateAligner11ts.java687 final int scoreFromDel=packed[MODE_DEL][row-1][col-1]&SCOREMASK; in fillUnlimited() local
798 final int scoreFromDel=packed[MODE_DEL][row][col-1]&SCOREMASK; in fillUnlimited() local
/dports/biology/bbmap/bbmap/jni/
H A DMultiStateAligner11tsJNI.c155 const jint scoreFromDel=packed[idxDEL+tmp1+col-1]&SCOREMASK; in fillUnlimited() local
226 const jint scoreFromDel=packed[idxDEL+tmp2+col-1]&SCOREMASK; in fillUnlimited() local