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Searched defs:scoreFromDiag (Results 1 – 6 of 6) sorted by relevance

/dports/biology/bbmap/bbmap/current/aligner/
H A DMultiStateAligner9PacBioAdapter3.java751 final int scoreFromDiag=packed[MODE_MS][row-1][col-1]&SCOREMASK; local
779 final int scoreFromDiag=packed[MODE_MS][row][col-1]&SCOREMASK; local
792 final int scoreFromDiag=packed[MODE_MS][row-1][col]&SCOREMASK; local
888 final int scoreFromDiag=packed[MODE_MS][row-1][col-1]&SCOREMASK; in score() local
900 final int scoreFromDiag=packed[MODE_MS][row][col-1]&SCOREMASK; in score() local
910 final int scoreFromDiag=packed[MODE_MS][row-1][col]&SCOREMASK; in score() local
H A DMultiStateAligner9PacBioAdapter.java745 final int scoreFromDiag=packed[MODE_MS][row-1][col-1]&SCOREMASK; local
H A DMultiStateAligner9PacBioAdapter2.java855 final int scoreFromDiag=packed[MODE_MS][row][col-1]&SCOREMASK; local
H A DSingleStateAlignerFlatFloat.java200 final float scoreFromDiag=packed[row-1][col-1]; in getState() local
/dports/biology/bbmap/bbmap/current/align2/
H A DMultiStateAligner11ts.java686 final int scoreFromDiag=packed[MODE_MS][row-1][col-1]&SCOREMASK; in fillUnlimited() local
797 final int scoreFromDiag=packed[MODE_MS][row][col-1]&SCOREMASK; in fillUnlimited() local
857 final int scoreFromDiag=packed[MODE_MS][row-1][col]&SCOREMASK; in fillUnlimited() local
/dports/biology/bbmap/bbmap/jni/
H A DMultiStateAligner11tsJNI.c154 const jint scoreFromDiag=packed[idxMS+tmp1+col-1]&SCOREMASK; in fillUnlimited() local
225 const jint scoreFromDiag=packed[idxMS+tmp2+col-1]&SCOREMASK; in fillUnlimited() local
267 const jint scoreFromDiag=packed[idxMS+tmp1+col]&SCOREMASK; in fillUnlimited() local