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Searched defs:scoreFromIns (Results 1 – 6 of 6) sorted by relevance

/dports/biology/bbmap/bbmap/current/aligner/
H A DMultiStateAligner9PacBioAdapter3.java753 final int scoreFromIns=packed[MODE_INS][row-1][col-1]&SCOREMASK; local
793 final int scoreFromIns=packed[MODE_INS][row-1][col]&SCOREMASK; local
890 final int scoreFromIns=packed[MODE_INS][row-1][col-1]&SCOREMASK; in score() local
911 final int scoreFromIns=packed[MODE_INS][row-1][col]&SCOREMASK; in score() local
H A DMultiStateAligner9PacBioAdapter.java747 final int scoreFromIns=packed[MODE_INS][row-1][col-1]&SCOREMASK; local
H A DSingleStateAlignerFlat2_1D.java104 final int scoreFromIns=get(row-1, col); in fillUnlimited()
H A DSingleStateAlignerFlatFloat.java202 final float scoreFromIns=packed[row-1][col]; in getState() local
/dports/biology/bbmap/bbmap/current/align2/
H A DMultiStateAligner11ts.java688 final int scoreFromIns=packed[MODE_INS][row-1][col-1]&SCOREMASK; in fillUnlimited() local
858 final int scoreFromIns=packed[MODE_INS][row-1][col]&SCOREMASK; in fillUnlimited() local
/dports/biology/bbmap/bbmap/jni/
H A DMultiStateAligner11tsJNI.c156 const jint scoreFromIns=packed[idxINS+tmp1+col-1]&SCOREMASK; in fillUnlimited() local
268 const jint scoreFromIns=packed[idxINS+tmp1+col]&SCOREMASK; in fillUnlimited() local