| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/util/ |
| H A D | score_builder.hpp | 142 void SetEffectiveSearchSpace(Int8 searchsp) // required for blast e-values in SetEffectiveSearchSpace()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | rpsblast.c | 511 Int8 searchsp = (Int8) myargs[OPT_SEARCHSP].floatvalue; in s_FillOptions() local
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| H A D | blast_driver.c | 350 Int8 searchsp = (Int8) myargs[ARG_SEARCHSP].floatvalue; in s_FillOptions() local
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| H A D | blastall.c | 1282 Int8 searchsp = (Int8)myargs[ARG_SEARCHSP].floatvalue; in s_FillOptions() local
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| H A D | megablast.c | 1980 Int8 searchsp = (Int8)myargs[ARG_SEARCHSP].floatvalue; in BLAST_FillOptions() local
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_parameters.c | 909 Int8 searchsp; in BlastHitSavingParametersUpdate() local
952 Int8 searchsp = (Int8)MIN(avg_qlen, avg_subject_length) * in BlastHitSavingParametersUpdate() local
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| H A D | blast_stat.c | 4025 Int8 searchsp) /* size of search space */ in BlastKarlinEtoS_simple()
4076 Int8 searchsp, /* size of search space. */ in BLAST_Cutoffs()
4142 Int8 searchsp) /* size of search space. */ in BLAST_KarlinStoE_simple()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_parameters.c | 913 Int8 searchsp; in BlastHitSavingParametersUpdate() local
956 Int8 searchsp = (Int8)MIN(avg_qlen, avg_subject_length) * in BlastHitSavingParametersUpdate() local
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| H A D | blast_stat.c | 4025 Int8 searchsp) /* size of search space */ in BlastKarlinEtoS_simple()
4076 Int8 searchsp, /* size of search space. */ in BLAST_Cutoffs()
4142 Int8 searchsp) /* size of search space. */ in BLAST_KarlinStoE_simple()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_parameters.c | 913 Int8 searchsp; in BlastHitSavingParametersUpdate() local
956 Int8 searchsp = (Int8)MIN(avg_qlen, avg_subject_length) * in BlastHitSavingParametersUpdate() local
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| H A D | blast_stat.c | 4025 Int8 searchsp) /* size of search space */ in BlastKarlinEtoS_simple()
4076 Int8 searchsp, /* size of search space. */ in BLAST_Cutoffs()
4142 Int8 searchsp) /* size of search space. */ in BLAST_KarlinStoE_simple()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blastkar.c | 4342 Nlm_FloatHi searchsp, /* size of search space. */ in BlastCutoffs()
4423 Nlm_FloatHi searchsp) /* size of search space */ in BlastKarlinEtoS_simple()
4463 Nlm_FloatHi searchsp) /* size of search space. */ in BlastKarlinStoP_simple()
4492 Nlm_FloatHi searchsp) /* size of search space. */ in BlastKarlinStoE_simple()
4958 ConvertEtoPseudoS(Nlm_FloatHi E, Nlm_FloatHi searchsp) in ConvertEtoPseudoS()
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| H A D | rpsutil.c | 648 FloatHi searchsp; in RPSUpdateDbSize() local
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| H A D | blast.c | 4140 FloatHi searchsp; in BLASTCalculateSearchSpace() local
10185 Nlm_FloatHi searchsp, /* total search space. */ in blast_set_parameters()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/composition_adjustment/ |
| H A D | redo_alignment.c | 944 s_EvalueFromScore(int score, double Lambda, double logK, double searchsp) in s_EvalueFromScore()
1368 double searchsp; /* effective search space */ in Blast_RedoOneMatchSmithWaterman() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/composition_adjustment/ |
| H A D | redo_alignment.c | 944 s_EvalueFromScore(int score, double Lambda, double logK, double searchsp) in s_EvalueFromScore()
1368 double searchsp; /* effective search space */ in Blast_RedoOneMatchSmithWaterman() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/composition_adjustment/ |
| H A D | redo_alignment.c | 944 s_EvalueFromScore(int score, double Lambda, double logK, double searchsp) in s_EvalueFromScore()
1368 double searchsp; /* effective search space */ in Blast_RedoOneMatchSmithWaterman() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | blastoptions_unit_test.cpp | 283 s_FillSearchSpace(BlastQueryInfo *query_info, Int8 searchsp) in s_FillSearchSpace()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | blastoptions_unit_test.cpp | 283 s_FillSearchSpace(BlastQueryInfo *query_info, Int8 searchsp) in s_FillSearchSpace()
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