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Searched defs:seedmms (Results 1 – 9 of 9) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Daligner_sw_driver.cpp496 int seedmms, // # mismatches allowed in seed in prioritizeSATups()
765 int seedmms, // # mismatches allowed in seed in extendSeeds()
1398 int seedmms, // # mismatches allowed in seed in extendSeedsPaired()
H A Daligner_result.h1125 int seedmms, in setParams()
1137 int seedmms() const { return seedmms_; } in seedmms() function
H A Daligner_result.cpp138 int seedmms, // # seed mms allowed in init()
H A Dbt2_search.cpp2762 int seedmms) in printMmsSkipMsg()
/dports/biology/hisat2/hisat2-2.2.1/
H A Daligner_sw_driver.h1019 int seedmms, // # mismatches allowed in seed in prioritizeSATups()
1289 int seedmms, // # mismatches allowed in seed in extendSeeds()
1926 int seedmms, // # mismatches allowed in seed in extendSeedsPaired()
H A Daligner_result.h1442 int seedmms, in setParams()
1454 int seedmms() const { return seedmms_; } in seedmms() function
H A Daligner_result.cpp150 int seedmms, // # seed mms allowed in init()
H A Dhisat_bp.cpp2684 int seedmms) in printMmsSkipMsg()
H A Dhisat2.cpp3018 int seedmms) in printMmsSkipMsg()