Searched defs:seedmms (Results 1 – 9 of 9) sorted by relevance
/dports/biology/bowtie2/bowtie2-2.4.4/ |
H A D | aligner_sw_driver.cpp | 496 int seedmms, // # mismatches allowed in seed in prioritizeSATups() 765 int seedmms, // # mismatches allowed in seed in extendSeeds() 1398 int seedmms, // # mismatches allowed in seed in extendSeedsPaired()
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H A D | aligner_result.h | 1125 int seedmms, in setParams() 1137 int seedmms() const { return seedmms_; } in seedmms() function
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H A D | aligner_result.cpp | 138 int seedmms, // # seed mms allowed in init()
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H A D | bt2_search.cpp | 2762 int seedmms) in printMmsSkipMsg()
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/dports/biology/hisat2/hisat2-2.2.1/ |
H A D | aligner_sw_driver.h | 1019 int seedmms, // # mismatches allowed in seed in prioritizeSATups() 1289 int seedmms, // # mismatches allowed in seed in extendSeeds() 1926 int seedmms, // # mismatches allowed in seed in extendSeedsPaired()
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H A D | aligner_result.h | 1442 int seedmms, in setParams() 1454 int seedmms() const { return seedmms_; } in seedmms() function
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H A D | aligner_result.cpp | 150 int seedmms, // # seed mms allowed in init()
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H A D | hisat_bp.cpp | 2684 int seedmms) in printMmsSkipMsg()
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H A D | hisat2.cpp | 3018 int seedmms) in printMmsSkipMsg()
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