| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | aln_error_reporter.cpp | 63 const string& seqId) in Fatal()
92 const string& seqId) in Error()
109 const string& seqId) in Warn()
128 const string& seqId) in Report()
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| H A D | aln_util.cpp | 47 AlnUtil::CheckId(const string& seqId, in CheckId()
143 string& seqId, in ProcessDefline()
175 string& seqId, in ProcessDataLine()
205 string& seqId, in ProcessDataLine()
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| H A D | aln_scanner.cpp | 94 const auto& seqId = mSeqIds[i]; in xVerifyAlignmentData() local
180 for (auto seqId: mSeqIds) { in xExportAlignmentData() local
200 const string& seqId, in xGetExistingSeqIdInfo()
230 const string& seqId, in xSeqIdIsEqualToInfoAt()
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| H A D | aln_scanner_fastagap.cpp | 70 string& seqId, in sSplitFastaDef()
97 string seqId; in xImportAlignmentData() local
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| H A D | aln_scanner_sequin.cpp | 121 string seqId, seqData; in xImportAlignmentData() local
241 string& seqId, in xExtractSequinSequenceData()
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| H A D | aln_scanner_multalign.cpp | 141 string seqId, seqData; in xImportAlignmentData() local
194 const TLineInfo& seqId, in xVerifySingleSequenceData()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | aln_error_reporter.cpp | 63 const string& seqId) in Fatal()
92 const string& seqId) in Error()
109 const string& seqId) in Warn()
128 const string& seqId) in Report()
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| H A D | aln_util.cpp | 47 AlnUtil::CheckId(const string& seqId, in CheckId()
143 string& seqId, in ProcessDefline()
175 string& seqId, in ProcessDataLine()
205 string& seqId, in ProcessDataLine()
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| H A D | aln_scanner.cpp | 94 const auto& seqId = mSeqIds[i]; in xVerifyAlignmentData() local
180 for (auto seqId: mSeqIds) { in xExportAlignmentData() local
200 const string& seqId, in xGetExistingSeqIdInfo()
230 const string& seqId, in xSeqIdIsEqualToInfoAt()
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| H A D | aln_scanner_fastagap.cpp | 70 string& seqId, in sSplitFastaDef()
97 string seqId; in xImportAlignmentData() local
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| H A D | aln_scanner_sequin.cpp | 121 string seqId, seqData; in xImportAlignmentData() local
241 string& seqId, in xExtractSequinSequenceData()
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| /dports/devel/fbthrift/fbthrift-2021.12.27.00/thrift/lib/cpp2/async/tests/ |
| H A D | RpcTypesTest.cpp | 38 auto lsr2 = [](uint32_t seqId) { in TEST_P()
45 auto lsr3 = [](uint32_t seqId) { in TEST_P()
58 auto lsrep1 = [](LegacySerializedResponse&& lsr, uint32_t seqId) { in TEST_P()
68 auto srep = [](SerializedResponse&& sr, uint32_t seqId) { in TEST_P()
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_sequence_dbi/ |
| H A D | SequenceDbiSQLiteSpecificUnitTests.cpp | 188 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, seqLength, os); in IMPLEMENT_TEST() local
243 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, seqLength, os); in IMPLEMENT_TEST() local
297 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
351 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
408 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
465 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
523 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
693 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
749 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
805 U2DataId seqId = SequenceSQLiteSpecificTestData::createTestSequence(true, baseData, os); in IMPLEMENT_TEST() local
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/ |
| H A D | src_quals.cpp | 56 const CTempString& seqId, in sPostError()
80 string seqId = bioseq.GetId().front()->AsFastaString(); in sReportMissingMods() local
97 string seqId = bioseq.GetId().front()->AsFastaString(); in sReportMultipleMatches() local
130 const CTempString& seqId) in sReportDuplicateIds()
154 const CTempString& seqId) in sReportUnusedMods()
283 CTempString seqId, remainder; in ReportUnusedIds() local
431 CTempString seqId, remainder; // revisit this in x_RegisterLine() local
465 CTempString seqId, remainder; // revisit this in x_RegisterLine() local
559 const string& seqId, in sReportError()
686 string seqId = bioseq.GetId().front()->AsFastaString(); in operator ()() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuSequenceTable.cpp | 99 …nceTable::findSequencesInTheGroup(CRef< CSeq_id > seqId, vector< CRef< CBioseq > >& bioseqVec)const in findSequencesInTheGroup()
108 bool SequenceTable::findSequence(CRef< CSeq_id > seqId, CRef< CBioseq >& bioseq)const in findSequence()
129 bool SequenceTable::findSequence(CRef< CSeq_id > seqId, CRef< CSeq_entry >& seqEntry)const in findSequence()
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| /dports/databases/hbase/hbase-1.2.1/hbase-procedure/src/test/java/org/apache/hadoop/hbase/procedure2/util/ |
| H A D | TestTimeoutBlockingQueue.java | 45 private int seqId; field in TestTimeoutBlockingQueue.TestObject
47 public TestObject(int seqId, long timeout) { in TestObject()
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| /dports/games/trenchbroom/TrenchBroom-ed46601/common/src/Model/ |
| H A D | Issue.cpp | 32 size_t Issue::seqId() const { in seqId() function in TrenchBroom::Model::Issue
71 static size_t seqId = 0; in nextSeqId() local
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| /dports/games/libretro-scummvm/scummvm-7b1e929/engines/scumm/imuse_digi/ |
| H A D | dimuse_music.cpp | 86 void IMuseDigital::setDigMusicSequence(int seqId) { in setDigMusicSequence()
233 void IMuseDigital::setComiMusicSequence(int seqId) { in setComiMusicSequence()
365 void IMuseDigital::setFtMusicSequence(int seqId) { in setFtMusicSequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
| H A D | csnpdb.cpp | 83 int CSnpDb::First( const string& seqId ) in First()
100 int CSnpDb::First( int seqId ) in First()
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| /dports/games/scummvm/scummvm-2.5.1/engines/scumm/imuse_digi/ |
| H A D | dimuse_music.cpp | 86 void IMuseDigital::setDigMusicSequence(int seqId) { in setDigMusicSequence()
234 void IMuseDigital::setComiMusicSequence(int seqId) { in setComiMusicSequence()
456 void IMuseDigital::setFtMusicSequence(int seqId) { in setFtMusicSequence()
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| /dports/biology/checkm/CheckM-1.0.18/checkm/ |
| H A D | ssuFinder.py | 90 def __addHit(self, hits, seqId, info, concatenateThreshold): argument
149 def __addDomainHit(self, hits, seqId, info): argument
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| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | RemoteDBFetcherWorker.cpp | 138 const QString seqId = nextId(); in tick() local
194 … SharedDbiDataHandler seqId = context->getDataStorage()->getDataHandler(dnao->getEntityRef()); in sl_taskFinished() local
222 QString seqId; in getIdFromList() local
233 QString seqId = getIdFromList(); in getIdFromFile() local
484 … SharedDbiDataHandler seqId = context->getDataStorage()->getDataHandler(dnao->getEntityRef()); in sl_taskFinished() local
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/library/script/ |
| H A D | ScriptEngineUtils.cpp | 87 SharedDbiDataHandler seqId = value.value<SharedDbiDataHandler>(); in toScriptValue() local
96 …SharedDbiDataHandler seqId = ScriptEngineUtils::getDbiId(engine, value, SequenceScriptClass::CLASS… in fromScriptValue() local
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| /dports/databases/hbase/hbase-1.2.1/hbase-common/src/main/java/org/apache/hadoop/hbase/ |
| H A D | SettableSequenceId.java | 35 void setSequenceId(long seqId) throws IOException; in setSequenceId()
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| /dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/util/ |
| H A D | TestBoundedPriorityBlockingQueue.java | 46 private final int seqId; field in TestBoundedPriorityBlockingQueue.TestObject
48 public TestObject(final int priority, final int seqId) { in TestObject()
|