| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | rpsutil.c | 1059 …, Nlm_FloatHiPtr LambdaRatio, Nlm_FloatHi scalingFactor, Int4 subject_length, Uint1Ptr subject_seq) in RPSimpalaStatCorrections()
1140 Uint1Ptr subject_seq, in RPSSearchPartialPrepare()
1177 Uint1Ptr subject_seq, SeqLocPtr slp, BioseqPtr subject_bsp) in RPSCalcEValue()
1290 Uint1Ptr subject_seq, SeqLocPtr slp, BioseqPtr in RPSAlignTraceBack()
1486 Uint1Ptr subject_seq, SeqLocPtr slp, BioseqPtr in RPS_FIX()
1703 Uint1Ptr subject_seq, subject_seq_start; in RPSBlastSearchEx() local
1842 Uint1Ptr subject_seq, subject_seq_start; in RPSBlastSearchLight() local
1995 Uint1Ptr subject_seq, subject_seq_start; in RPSBlastSearch() local
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| H A D | blastool.c | 4579 Uint1Ptr query_seq, subject_start=NULL, subject_seq, rev_subject=NULL; in BlastPrintAlignInfo() local
4953 FillSequenceBuffers(Uint1* query_seq, Uint1* subject_seq, in FillSequenceBuffers()
5034 Uint1Ptr query_seq, subject_seq = NULL; in MegaBlastPrintAlignInfo() local
6007 Uint1Ptr query_seq, subject_seq = NULL, q, s; in BlastHSPGetNumIdentical() local
6076 OOFBlastHSPGetNumIdentical(Uint1Ptr query_seq, Uint1Ptr subject_seq, in OOFBlastHSPGetNumIdentical()
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| H A D | blastutl.c | 2606 BlastTwoSequencesCoreEx (BlastSearchBlkPtr search, BioseqPtr subject_bsp, Uint1Ptr subject_seq, Int… in BlastTwoSequencesCoreEx()
2723 (BlastSearchBlkPtr search, Uint1Ptr subject_seq, Int4 subject_length) in RPS2SeqImpalaStatCorrections()
2793 BlastTwoSequencesCore (BlastSearchBlkPtr search, SeqLocPtr slp, Uint1Ptr subject_seq, Int4 subject_… in BlastTwoSequencesCore()
3405 Uint1Ptr subject_seq = NULL, subject_seq_start = NULL; in B2SPssmOnTheFlyByLoc() local
3533 Uint1Ptr subject_seq, subject_seq_start; in BlastTwoSequencesByLocWithCallback() local
3822 Uint1Ptr subject_seq, subject_seq_start; in BlastSequencesOnTheFlyEx() local
3909 Uint1Ptr subject_seq, subject_seq_start; in BlastSequencesOnTheFlyByLoc() local
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| H A D | blast.c | 6529 Uint1Ptr subject_seq=NULL; in BLASTPerformSearchWithReadDb() local
6562 BLASTPerformSearch (BlastSearchBlkPtr search, Int4 subject_length, Uint1Ptr subject_seq) in BLASTPerformSearch()
6602 BLASTPerform2PassSearch (BlastSearchBlkPtr search, Int4 subject_length, Uint1Ptr subject_seq) in BLASTPerform2PassSearch()
6708 BLASTPerformFinalSearch (BlastSearchBlkPtr search, Int4 subject_length, Uint1Ptr subject_seq) in BLASTPerformFinalSearch()
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| H A D | mblast.c | 4291 Uint1Ptr query_seq, subject_seq = NULL; in MegaBlastGetHspPercentIdentity() local
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| /dports/biology/diamond/diamond-2.0.13/src/align/ |
| H A D | culling.cpp | 124 …t subject_len, const char* subject_title, const Sequence& query_seq, const Sequence& subject_seq) { in filter_hsp()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
| H A D | internal_stops.cpp | 318 string subject_seq; in GetCDSNucleotideSequence() local
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_tabular.c | 155 Uint1* query_seq, Uint1* subject_seq, Int4 query_length, in FillNuclSequenceBuffers()
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| /dports/biology/diamond/diamond-2.0.13/src/basic/ |
| H A D | match.h | 382 const Sequence subject_seq; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/ |
| H A D | blastxml_format.cpp | 197 string subject_seq; in s_SeqAlignSetToXMLHsps() local
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| H A D | blastxml2_format.cpp | 185 string subject_seq; in s_SeqAlignSetToXMLHsps() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
| H A D | blastxml_format.cpp | 197 string subject_seq; in s_SeqAlignSetToXMLHsps() local
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| H A D | blastxml2_format.cpp | 185 string subject_seq; in s_SeqAlignSetToXMLHsps() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | blasthits_unit_test.cpp | 508 Uint1* subject_seq = NULL; in BOOST_AUTO_TEST_CASE() local
841 Uint1* subject_seq = NULL; in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | blasthits_unit_test.cpp | 508 Uint1* subject_seq = NULL; in BOOST_AUTO_TEST_CASE() local
841 Uint1* subject_seq = NULL; in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_kappa.c | 933 Uint1* subject_seq, int subject_len, in s_ExtendRight()
1028 Uint1* subject_seq, int subject_len, in s_ExtendLeft()
1134 Uint1* subject_seq, in s_FindNumIdentical()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_kappa.c | 943 Uint1* subject_seq, int subject_len, in s_ExtendRight()
1038 Uint1* subject_seq, int subject_len, in s_ExtendLeft()
1144 Uint1* subject_seq, in s_FindNumIdentical()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_kappa.c | 943 Uint1* subject_seq, int subject_len, in s_ExtendRight()
1038 Uint1* subject_seq, int subject_len, in s_ExtendLeft()
1144 Uint1* subject_seq, in s_FindNumIdentical()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | megablast.c | 890 Uint1Ptr query_seq, subject_seq = NULL; in MegaBlastPrintSegments() local
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | ingenext.c | 3839 Uint1Ptr query_seq, subject_seq; in Ing_PrintBlastReport() local
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