| /dports/biology/graphlan/nsegata-graphlan-66ec7cfce81e/examples/hmp_metahit_functional/ |
| H A D | merge-humann.py | 140 taxa = m1[:m1.rfind('_')] variable
149 taxa = m1[:m1.rfind('_')] variable
160 taxa = m2[:m2.rfind('_')] variable
|
| /dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/legacy/ |
| H A D | treemanip.py | 53 def prune_taxa(tree, taxa, suppress_unifurcations=True): argument
59 def retain_taxa(tree, taxa, suppress_unifurcations=True): argument
|
| /dports/biology/mmseqs2/MMseqs2-13-45111/src/test/ |
| H A D | TestTaxonomy.cpp | 11 std::vector<int> taxa; in main() local
|
| /dports/biology/iqtree/IQ-TREE-2.0.6/ncl/ |
| H A D | nxstreesblock.h | 73 NxsTaxaBlock *taxa; /* pointer to existing NxsTaxaBlock object */ variable
|
| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tree/ |
| H A D | RandomFactory.pm | 286 sub taxa { subroutine
|
| /dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/utility/ |
| H A D | textprocessing.py | 94 def unique_taxon_label_map(taxa, taxon_label_map=None, max_label_len=0, logger=None): argument
|
| /dports/biology/python-nexus/python-nexus-1.63/nexus/handlers/ |
| H A D | tree.py | 33 def taxa(self): member in TreeHandler
|
| H A D | data.py | 50 def taxa(self): member in DataHandler
|
| /dports/biology/viennarna/ViennaRNA-2.4.18/src/Cluster/ |
| H A D | treeplot.c | 135 Node **taxa; in W2Phylo() local
196 Node **taxa; in Nj2Phylo() local
|
| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | mtreeset.cpp | 93 NodeVector taxa; in init() local
123 NodeVector taxa; in init() local
265 NodeVector taxa; in checkConsistency() local
452 NodeVector taxa; in convertSplits() local
|
| H A D | mexttree.cpp | 53 NodeVector taxa; in generateRandomTree() local
447 void MExtTree::createCluster(NodeVector &taxa, mmatrix(int) &clusters, Node *node, Node *dad) { in createCluster()
|
| H A D | matree.cpp | 70 NodeVector taxa; in comparedTo() local
|
| H A D | discordance.cpp | 114 vector<IntVector> taxa; in computeSiteConcordance() local
434 vector<IntVector> taxa; in computeQuartetConcordance() local
|
| /dports/biology/bbmap/bbmap/current/jasper/ |
| H A D | DenseTreeValidate.java | 267 private long taxa=0; field in DenseTreeValidate
|
| H A D | SparseTreeValidate.java | 385 private long taxa=0; field in SparseTreeValidate
|
| /dports/biology/figtree/figtree-1.4.4/src/figtree/treeviewer/ |
| H A D | Parsimony.java | 51 private List<Taxon> taxa; field in Parsimony
|
| /dports/biology/graphlan/nsegata-graphlan-66ec7cfce81e/pyphlan/ |
| H A D | choco_summary.py | 85 taxa = g2t[gene_seed] variable
|
| H A D | choco_profile.py | 89 taxa = g2t[gene_seed] variable
|
| /dports/biology/graphlan/nsegata-pyphlan-eae40ebc0030/ |
| H A D | choco_summary.py | 85 taxa = g2t[gene_seed] variable
|
| H A D | choco_profile.py | 89 taxa = g2t[gene_seed] variable
|
| /dports/biology/python-nexus/python-nexus-1.63/nexus/ |
| H A D | writer.py | 50 def taxa(self): member in NexusWriter
|
| /dports/biology/mmseqs2/MMseqs2-13-45111/src/taxonomy/ |
| H A D | lca.cpp | 116 std::vector<int> taxa; in dolca() local
|
| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | ReduceSilva.java | 268 String taxa=split[split.length-column-1]; in processRead() local
|
| /dports/biology/figtree/figtree-1.4.4/src/figtree/application/ |
| H A D | JSONTreeExporter.java | 304 private Set<Taxon> taxa = null; field in JSONTreeExporter
|
| /dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/datamodel/ |
| H A D | taxonmodel.py | 380 def poll_taxa(self, taxa=None): argument
782 def add_taxa(self, taxa): argument
2048 def _set_domain_taxon_namespace(self, taxa): argument
2059 def _set_range_taxon_namespace(self, taxa): argument
|