/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajarr.c | 116 AjPChar thys; in ajChararrNew() local 147 AjPChar thys; in ajChararrNewRes() local 328 AjPInt thys; in ajIntNew() local 358 AjPInt thys; in ajIntNewRes() local 557 AjPUint thys; in ajUintNew() local 588 AjPUint thys; in ajUintNewRes() local 1052 AjPFloat thys; in ajFloatNew() local 1082 AjPFloat thys; in ajFloatNewRes() local 1594 AjPShort thys; in ajShortNew() local 1864 AjPLong thys; in ajLongNew() local [all …]
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H A D | ajmatrices.c | 314 void ajMatrixfDel(AjPMatrixf *thys) in ajMatrixfDel() 368 void ajMatrixDel(AjPMatrix *thys) in ajMatrixDel() 830 AjPStr ajMatrixGetCodes(const AjPMatrix thys) in ajMatrixGetCodes() 858 AjPStr ajMatrixfGetCodes(const AjPMatrixf thys) in ajMatrixfGetCodes() 929 ajuint ajMatrixGetRows(const AjPMatrix thys) in ajMatrixGetRows() 951 ajuint ajMatrixGetSize(const AjPMatrix thys) in ajMatrixGetSize() 973 ajuint ajMatrixfGetRows(const AjPMatrixf thys) in ajMatrixfGetRows() 995 ajuint ajMatrixfGetSize(const AjPMatrixf thys) in ajMatrixfGetSize() 1019 AjPSeqCvt ajMatrixGetCvt(const AjPMatrix thys) in ajMatrixGetCvt() 1043 AjPSeqCvt ajMatrixfGetCvt(const AjPMatrixf thys) in ajMatrixfGetCvt() [all …]
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H A D | ajnexus.c | 358 AjPNexus thys; in ajNexusNew() local 380 AjPNexusTaxa thys; in nexusTaxaNew() local 488 AjPNexusSets thys; in nexusSetsNew() local 557 AjPNexusTrees thys; in nexusTreesNew() local 579 AjPNexusNotes thys; in nexusNotesNew() local 602 AjPNexus thys; in ajNexusDel() local 638 AjPNexusTaxa thys; in nexusTaxaDel() local 773 AjPNexusSets thys; in nexusSetsDel() local 879 AjPNexusTrees thys; in nexusTreesDel() local 910 AjPNexusNotes thys; in nexusNotesDel() local [all …]
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H A D | ajcod.c | 268 AjPCod thys; in ajCodNew() local 303 AjPCod thys; in ajCodNewCodenum() local 361 AjPCod ajCodNewCod(const AjPCod thys) in ajCodNewCod() 418 AjPCod thys = *pthys; in ajCodDel() local 715 void ajCodClear(AjPCod thys) in ajCodClear() 757 void ajCodClearData(AjPCod thys) in ajCodClearData() 2232 void ajCodSetBacktranslate(AjPCod thys) in ajCodSetBacktranslate() 3433 double ajCodCalcNc(const AjPCod thys) in ajCodCalcNc() 3831 ajint ajCodGetNumcds(const AjPCod thys) in ajCodGetNumcds() 3849 ajint ajCodGetCode(const AjPCod thys) in ajCodGetCode() [all …]
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H A D | ajpat.c | 237 AjPPatternRegex thys = *pthys; in ajPatternRegexDel() local 264 AjPPatternSeq thys = *pthys; in ajPatternSeqDel() local 403 AjBool ajPatternSeqGetProtein (const AjPPatternSeq thys) in ajPatternSeqGetProtein() 667 AjPPatlistRegex thys = NULL; in ajPatlistRegexDel() local 704 AjPPatlistSeq thys = NULL; in ajPatlistSeqDel() local 1028 ajuint ajPatlistSeqGetSize (const AjPPatlistSeq thys) in ajPatlistSeqGetSize() 1097 AjBool ajPatlistRegexGetNext (AjPPatlistRegex thys, in ajPatlistRegexGetNext() 1129 void ajPatlistRegexRewind (AjPPatlistRegex thys) in ajPatlistRegexRewind() 1152 void ajPatlistSeqRewind (AjPPatlistSeq thys) in ajPatlistSeqRewind() 1202 void ajPatlistSeqRemoveCurrent (AjPPatlistSeq thys) in ajPatlistSeqRemoveCurrent() [all …]
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H A D | ajtree.c | 325 AjPTree ajTreestrCopy(const AjPTree thys) in ajTreestrCopy() 348 AjPTree ajTreeCopy(const AjPTree thys) in ajTreeCopy() 376 ajuint ajTreeLength(const AjPTree thys) in ajTreeLength() 992 AjPTree ajTreeAddNode(AjPTree thys) in ajTreeAddNode() 1027 AjPTree ajTreeAddSubNode(AjPTree thys) in ajTreeAddSubNode() 1159 void ajTreeTrace(const AjPTree thys) in ajTreeTrace() 1193 void ajTreestrTrace(const AjPTree thys) in ajTreestrTrace() 1425 AjPTree ajTreeNext(const AjPTree thys) in ajTreeNext() 1445 AjPTree ajTreePrev(const AjPTree thys) in ajTreePrev() 1465 AjPTree ajTreeDown(const AjPTree thys) in ajTreeDown() [all …]
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H A D | ajreport.c | 307 static void reportWriteEmbl(AjPReport thys, in reportWriteEmbl() 370 static void reportWriteGff(AjPReport thys, in reportWriteGff() 400 static void reportWritePir(AjPReport thys, in reportWritePir() 869 static void reportWriteDraw(AjPReport thys, in reportWriteDraw() 2770 AjPReport thys; in ajReportDel() local 3018 AjBool ajReportValid(AjPReport thys) in ajReportValid() 3099 AjBool ajReportWrite(AjPReport thys, in ajReportWrite() 3215 void ajReportClose(AjPReport thys) in ajReportClose() 3306 void ajReportWriteHeader(AjPReport thys, in ajReportWriteHeader() 3472 void ajReportWriteTail(AjPReport thys, in ajReportWriteTail() [all …]
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H A D | ajalign.c | 553 static void alignWriteMsf(AjPAlign thys) in alignWriteMsf() 2346 AjPAlign thys; in ajAlignDel() local 2392 void ajAlignReset(AjPAlign thys) in ajAlignReset() 2639 AjBool ajAlignValid(AjPAlign thys) in ajAlignValid() 2736 void ajAlignWrite(AjPAlign thys) in ajAlignWrite() 2772 void ajAlignClose(AjPAlign thys) in ajAlignClose() 2800 void ajAlignWriteHeader(AjPAlign thys) in ajAlignWriteHeader() 2948 void ajAlignWriteTail(AjPAlign thys) in ajAlignWriteTail() 4073 void ajAlignSetType(AjPAlign thys) in ajAlignSetType() 4185 AjBool ajAlignSetRange(AjPAlign thys, in ajAlignSetRange() [all …]
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H A D | ajrange.c | 96 AjPRange thys; in ajRangeNewI() local 378 AjPRange thys; in ajRangeNewRange() local 734 void ajRangeDel(AjPRange *thys) in ajRangeDel() 780 ajuint ajRangeGetSize(const AjPRange thys) in ajRangeGetSize() 881 AjBool ajRangeElementSet(AjPRange thys, ajuint element, in ajRangeElementSet() 916 AjBool ajRangeSetOffset(AjPRange thys, ajuint begin) in ajRangeSetOffset() 964 AjBool ajRangeSeqExtractList(const AjPRange thys, in ajRangeSeqExtractList() 1205 AjBool ajRangeSeqStuff(const AjPRange thys, AjPSeq seq) in ajRangeSeqStuff() 1520 AjBool ajRangeStrExtractList(const AjPRange thys, in ajRangeStrExtractList() 1881 AjBool ajRangeIsOrdered(const AjPRange thys) in ajRangeIsOrdered() [all …]
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H A D | ajfeat.c | 508 AjPFeature ajFeatNew(AjPFeattable thys, in ajFeatNew() 642 AjPFeature ajFeatNewII(AjPFeattable thys, in ajFeatNewII() 1603 AjPFeattable thys; in ajFeattableDel() local 1682 static void featClear(AjPFeature thys) in featClear() 2015 void ajFeattableClear(AjPFeattable thys) in ajFeattableClear() 7615 AjPFeattable thys = NULL; in ajFeattableNew() local 8021 AjPFeattable thys = NULL; in ajFeattableNewDna() local 8052 AjPFeattable thys = NULL; in ajFeattableNewSeq() local 8086 AjPFeattable thys = NULL; in ajFeattableNewProt() local 8566 void ajFeatTrace(const AjPFeature thys) in ajFeatTrace() [all …]
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H A D | ajtime.c | 158 AjPTime thys = NULL; in ajTimeNew() local 188 AjPTime thys; in ajTimeNewDayFmt() local 221 AjPTime thys = NULL; in ajTimeNewTime() local 246 AjPTime thys = NULL; in ajTimeNewToday() local 280 AjPTime thys = NULL; in ajTimeNewTodayFmt() local 379 time_t ajTimeGetTimetype(const AjPTime thys) in ajTimeGetTimetype() 520 AjBool ajTimeSetC(AjPTime thys, const char* timestr) in ajTimeSetC() 575 AjBool ajTimeSetS(AjPTime thys, const AjPStr timestr) in ajTimeSetS() 626 AjBool ajTimeSetLocal(AjPTime thys, const time_t timer) in ajTimeSetLocal() 791 void ajTimeTrace(const AjPTime thys) in ajTimeTrace() [all …]
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H A D | ajquery.c | 212 AjPQuery thys; in ajQueryDel() local 585 AjBool ajQueryIsSet(const AjPQuery thys) in ajQueryIsSet() 751 AjBool ajQueryAddFieldAndS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldAndS() 877 AjBool ajQueryAddFieldEorS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldEorS() 940 AjBool ajQueryAddFieldNotS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldNotS() 1007 AjBool ajQueryAddFieldOrS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldOrS() 1042 void ajQueryClear(AjPQuery thys) in ajQueryClear() 1126 AjBool ajQuerySetWild(AjPQuery thys) in ajQuerySetWild() 1219 void ajQueryStarclear(AjPQuery thys) in ajQueryStarclear() 1280 void ajQueryTrace(const AjPQuery thys) in ajQueryTrace() [all …]
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H A D | ajtextread.c | 370 AjPTextin thys; in ajTextinDel() local 428 AjPTextin thys; in ajTextinDelNofile() local 507 void ajTextinClear(AjPTextin thys) in ajTextinClear() 570 void ajTextinClearNewfile(AjPTextin thys) in ajTextinClearNewfile() 597 void ajTextinClearNewinput(AjPTextin thys) in ajTextinClearNewinput() 622 void ajTextinClearNofile(AjPTextin thys) in ajTextinClearNofile() 751 void ajTextinStoreClear(AjPTextin thys, in ajTextinStoreClear() 795 AjBool ajTextinStoreReadline(AjPTextin thys, in ajTextinStoreReadline() 975 void ajTextinTrace(const AjPTextin thys) in ajTextinTrace() 3424 AjPTextall thys; in ajTextallDel() local [all …]
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H A D | ajseqtype.c | 816 char ajSeqTypeNucS(const AjPStr thys) in ajSeqTypeNucS() 845 char ajSeqTypeDnaS(const AjPStr thys) in ajSeqTypeDnaS() 874 char ajSeqTypeRnaS(const AjPStr thys) in ajSeqTypeRnaS() 903 char ajSeqTypeGapdnaS(const AjPStr thys) in ajSeqTypeGapdnaS() 932 char ajSeqTypeGaprnaS(const AjPStr thys) in ajSeqTypeGaprnaS() 1007 char ajSeqTypeProtS(const AjPStr thys) in ajSeqTypeProtS() 1238 void ajSeqSetNuc(AjPSeq thys) in ajSeqSetNuc() 1271 void ajSeqSetProt(AjPSeq thys) in ajSeqSetProt() 1298 void ajSeqsetSetNuc(AjPSeqset thys) in ajSeqsetSetNuc() 1319 void ajSeqsetSetProt(AjPSeqset thys) in ajSeqsetSetProt() [all …]
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H A D | ajfeatwrite.c | 301 AjBool ajFeattabOutOpen(AjPFeattabOut thys, const AjPStr ufo) in ajFeattabOutOpen() 346 AjPFile ajFeattabOutFile(const AjPFeattabOut thys) in ajFeattabOutFile() 366 AjPStr ajFeattabOutFilename(const AjPFeattabOut thys) in ajFeattabOutFilename() 389 AjBool ajFeattabOutIsOpen(const AjPFeattabOut thys) in ajFeattabOutIsOpen() 412 AjBool ajFeattabOutIsLocal(const AjPFeattabOut thys) in ajFeattabOutIsLocal() 438 AjBool ajFeattabOutSet(AjPFeattabOut thys, const AjPStr ufo) in ajFeattabOutSet() 633 void ajFeattabOutClear(AjPFeattabOut *thys) in ajFeattabOutClear() 681 AjPFeattabOut thys; in ajFeattabOutDel() local 2124 const AjPFeattable thys) in ajFeattableWriteSwiss() 3916 static void featDumpSwiss(const AjPFeature thys, AjPFile file, in featDumpSwiss() [all …]
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H A D | ajxmlread.c | 262 AjPXmlin thys; in ajXmlinDel() local 320 void ajXmlinClear(AjPXmlin thys) in ajXmlinClear() 346 void ajXmlinQryC(AjPXmlin thys, const char* txt) in ajXmlinQryC() 369 void ajXmlinQryS(AjPXmlin thys, const AjPStr str) in ajXmlinQryS() 408 void ajXmlinTrace(const AjPXmlin thys) in ajXmlinTrace() 586 static AjBool xmlinQueryMatch(const AjPQuery thys, const AjPXml xml) in xmlinQueryMatch() 676 static AjBool xmlDefine(AjPXml thys, AjPXmlin xmlin) in xmlDefine() 2070 AjPXmlall thys; in ajXmlallDel() local 2129 void ajXmlallClear(AjPXmlall thys) in ajXmlallClear() 2176 const AjPStr ajXmlallGetxmlId(const AjPXmlall thys) in ajXmlallGetxmlId() [all …]
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H A D | ajstr.c | 2127 AjPStr thys; in ajStrNewC() local 2158 AjPStr thys; in ajStrNewK() local 2236 AjPStr thys; in ajStrNewRes() local 2265 AjPStr thys; in ajStrNewResC() local 2295 AjPStr thys; in ajStrNewResS() local 2328 AjPStr thys; in ajStrNewResLenC() local 2364 AjPStr thys; in strClone() local 2401 AjPStr thys; in strCloneL() local 2528 AjPStr thys; in ajStrDel() local 2601 AjPStr thys; in ajStrDelStatic() local [all …]
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H A D | ajseqread.c | 1507 AjPSeqin thys = ajSeqinNew(); in ajSeqinNewQueryC() local 1530 AjPSeqin thys = ajSeqinNew(); in ajSeqinNewQueryS() local 1570 AjPSeqin thys; in ajSeqinDel() local 1659 AjPSeqin thys; in ajSeqinUsa() local 2032 void ajSeqinClearPos(AjPSeqin thys) in ajSeqinClearPos() 2057 void ajSeqinClear(AjPSeqin thys) in ajSeqinClear() 11146 SeqPMsfData thys; in seqMsfDataDel() local 11198 SeqPMsfItem thys; in seqMsfItemDel() local 19578 SeqPStockholm thys = NULL; in stockholmNew() local 19767 SeqPSelex thys = NULL; in selexNew() local [all …]
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/dports/astro/gpsbabel/gpsbabel-gpsbabel_1_7_0/jeeps/ |
H A D | gpsmem.cc | 65 void GPS_Pvt_Del(GPS_PPvt_Data* thys) in GPS_Pvt_Del() 110 void GPS_Almanac_Del(GPS_PAlmanac* thys) in GPS_Almanac_Del() 151 void GPS_Track_Del(GPS_PTrack* thys) in GPS_Track_Del() 241 void GPS_Way_Del(GPS_PWay* thys) in GPS_Way_Del() 280 void GPS_Lap_Del(GPS_PLap* thys) in GPS_Lap_Del() 318 void GPS_Course_Del(GPS_PCourse* thys) in GPS_Course_Del() 357 void GPS_Course_Lap_Del(GPS_PCourse_Lap* thys) in GPS_Course_Lap_Del() 396 void GPS_Course_Point_Del(GPS_PCourse_Point* thys) in GPS_Course_Point_Del()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/graphics/ |
H A D | ajhist.c | 342 void ajHistDisplay(const AjPHist thys) in ajHistDisplay() 730 void ajHistSetMono(AjPHist thys, AjBool set) in ajHistSetMono() 752 void ajHistSetRlabelC(AjPHist thys, const char* txt) in ajHistSetRlabelC() 774 void ajHistSetTitleC(AjPHist thys, const char* txt) in ajHistSetTitleC() 796 void ajHistSetXlabelC(AjPHist thys, const char* txt) in ajHistSetXlabelC() 818 void ajHistSetYlabelC(AjPHist thys, const char* txt) in ajHistSetYlabelC() 841 void ajHistSetmultiColour(AjPHist thys, ajuint indexnum, ajint colour) in ajHistSetmultiColour() 1109 void ajHistDataAdd(AjPHist thys, ajuint indexnum, PLFLT *data) in ajHistDataAdd() 1216 __deprecated void ajHistSetBlackandWhite(AjPHist thys, AjBool set) in ajHistSetBlackandWhite() 1239 __deprecated void ajHistSetXAxisC(AjPHist thys, const char* strng) in ajHistSetXAxisC() [all …]
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H A D | ajgraph.c | 961 static void GraphSetName(const AjPGraph thys, in GraphSetName() 3358 AjPGraph thys = NULL; in ajGraphicsUnused() local 3957 void ajGraphClear(AjPGraph thys) in ajGraphClear() 4810 AjBool ajGraphIsData(const AjPGraph thys) in ajGraphIsData() 5204 static void GraphDraw(const AjPGraph thys) in GraphDraw() 5298 static void GraphPrint(const AjPGraph thys) in GraphPrint() 5352 void ajGraphTrace(const AjPGraph thys) in ajGraphTrace() 5623 AjPGraph thys; in ajGraphxyDel() local 5916 void ajGraphxySetRanges(AjPGraph thys) in ajGraphxySetRanges() 6708 AjPGraphdata thys; in ajGraphdataDel() local [all …]
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/dports/astro/gpsbabel14/gpsbabel-1.4.4/jeeps/ |
H A D | gpsmem.c | 72 void GPS_Packet_Del(GPS_PPacket* thys) in GPS_Packet_Del() 114 void GPS_Pvt_Del(GPS_PPvt_Data* thys) in GPS_Pvt_Del() 159 void GPS_Almanac_Del(GPS_PAlmanac* thys) in GPS_Almanac_Del() 200 void GPS_Track_Del(GPS_PTrack* thys) in GPS_Track_Del() 290 void GPS_Way_Del(GPS_PWay* thys) in GPS_Way_Del() 329 void GPS_Lap_Del(GPS_PLap* thys) in GPS_Lap_Del() 367 void GPS_Course_Del(GPS_PCourse* thys) in GPS_Course_Del() 406 void GPS_Course_Lap_Del(GPS_PCourse_Lap* thys) in GPS_Course_Lap_Del() 445 void GPS_Course_Point_Del(GPS_PCourse_Point* thys) in GPS_Course_Point_Del()
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/dports/astro/opencpn/OpenCPN-5.2.4/libs/garmin/jeeps/ |
H A D | gpsmem.c | 73 void GPS_Packet_Del(GPS_PPacket *thys) in GPS_Packet_Del() 116 void GPS_Pvt_Del(GPS_PPvt_Data *thys) in GPS_Pvt_Del() 162 void GPS_Almanac_Del(GPS_PAlmanac *thys) in GPS_Almanac_Del() 204 void GPS_Track_Del(GPS_PTrack *thys) in GPS_Track_Del() 295 void GPS_Way_Del(GPS_PWay *thys) in GPS_Way_Del() 335 void GPS_Lap_Del(GPS_PLap *thys) in GPS_Lap_Del() 374 void GPS_Course_Del(GPS_PCourse *thys) in GPS_Course_Del() 414 void GPS_Course_Lap_Del(GPS_PCourse_Lap *thys) in GPS_Course_Lap_Del() 454 void GPS_Course_Point_Del(GPS_PCourse_Point *thys) in GPS_Course_Point_Del()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/acd/ |
H A D | ajacd.c | 7279 static void acdSetXxxx(AcdPAcd thys) in acdSetXxxx() 7337 static void acdSetAppl(AcdPAcd thys) in acdSetAppl() 7459 static void acdSetSec(AcdPAcd thys) in acdSetSec() 7545 static void acdSetVar(AcdPAcd thys) in acdSetVar() 8286 static void acdSetCpdb(AcdPAcd thys) in acdSetCpdb() 10573 static void acdSetInt(AcdPAcd thys) in acdSetInt() 11170 static void acdSetObo(AcdPAcd thys) in acdSetObo() 13562 static void acdSetRel(AcdPAcd thys) in acdSetRel() 14180 static void acdSetSeq(AcdPAcd thys) in acdSetSeq() 16896 static void acdSetUrl(AcdPAcd thys) in acdSetUrl() [all …]
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
H A D | embshow.c | 269 EmbPShow thys; in embShowDel() local 629 void embShowAddBlank(EmbPShow thys) in embShowAddBlank() 656 void embShowAddTicks(EmbPShow thys) in embShowAddTicks() 684 void embShowAddTicknum(EmbPShow thys) in embShowAddTicknum() 1469 static void showFillSeq(const EmbPShow thys, in showFillSeq() 1609 static void showFillBlank(const EmbPShow thys, in showFillBlank() 1758 static void showFillComp(const EmbPShow thys, in showFillComp() 1836 static void showFillTran(const EmbPShow thys, in showFillTran() 2133 static void showFillRE(const EmbPShow thys, in showFillRE() 2901 static void showFillFT(const EmbPShow thys, in showFillFT() [all …]
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