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Searched defs:thys (Results 1 – 25 of 76) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajarr.c116 AjPChar thys; in ajChararrNew() local
147 AjPChar thys; in ajChararrNewRes() local
328 AjPInt thys; in ajIntNew() local
358 AjPInt thys; in ajIntNewRes() local
557 AjPUint thys; in ajUintNew() local
588 AjPUint thys; in ajUintNewRes() local
1052 AjPFloat thys; in ajFloatNew() local
1082 AjPFloat thys; in ajFloatNewRes() local
1594 AjPShort thys; in ajShortNew() local
1864 AjPLong thys; in ajLongNew() local
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H A Dajmatrices.c314 void ajMatrixfDel(AjPMatrixf *thys) in ajMatrixfDel()
368 void ajMatrixDel(AjPMatrix *thys) in ajMatrixDel()
830 AjPStr ajMatrixGetCodes(const AjPMatrix thys) in ajMatrixGetCodes()
858 AjPStr ajMatrixfGetCodes(const AjPMatrixf thys) in ajMatrixfGetCodes()
929 ajuint ajMatrixGetRows(const AjPMatrix thys) in ajMatrixGetRows()
951 ajuint ajMatrixGetSize(const AjPMatrix thys) in ajMatrixGetSize()
973 ajuint ajMatrixfGetRows(const AjPMatrixf thys) in ajMatrixfGetRows()
995 ajuint ajMatrixfGetSize(const AjPMatrixf thys) in ajMatrixfGetSize()
1019 AjPSeqCvt ajMatrixGetCvt(const AjPMatrix thys) in ajMatrixGetCvt()
1043 AjPSeqCvt ajMatrixfGetCvt(const AjPMatrixf thys) in ajMatrixfGetCvt()
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H A Dajnexus.c358 AjPNexus thys; in ajNexusNew() local
380 AjPNexusTaxa thys; in nexusTaxaNew() local
488 AjPNexusSets thys; in nexusSetsNew() local
557 AjPNexusTrees thys; in nexusTreesNew() local
579 AjPNexusNotes thys; in nexusNotesNew() local
602 AjPNexus thys; in ajNexusDel() local
638 AjPNexusTaxa thys; in nexusTaxaDel() local
773 AjPNexusSets thys; in nexusSetsDel() local
879 AjPNexusTrees thys; in nexusTreesDel() local
910 AjPNexusNotes thys; in nexusNotesDel() local
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H A Dajcod.c268 AjPCod thys; in ajCodNew() local
303 AjPCod thys; in ajCodNewCodenum() local
361 AjPCod ajCodNewCod(const AjPCod thys) in ajCodNewCod()
418 AjPCod thys = *pthys; in ajCodDel() local
715 void ajCodClear(AjPCod thys) in ajCodClear()
757 void ajCodClearData(AjPCod thys) in ajCodClearData()
2232 void ajCodSetBacktranslate(AjPCod thys) in ajCodSetBacktranslate()
3433 double ajCodCalcNc(const AjPCod thys) in ajCodCalcNc()
3831 ajint ajCodGetNumcds(const AjPCod thys) in ajCodGetNumcds()
3849 ajint ajCodGetCode(const AjPCod thys) in ajCodGetCode()
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H A Dajpat.c237 AjPPatternRegex thys = *pthys; in ajPatternRegexDel() local
264 AjPPatternSeq thys = *pthys; in ajPatternSeqDel() local
403 AjBool ajPatternSeqGetProtein (const AjPPatternSeq thys) in ajPatternSeqGetProtein()
667 AjPPatlistRegex thys = NULL; in ajPatlistRegexDel() local
704 AjPPatlistSeq thys = NULL; in ajPatlistSeqDel() local
1028 ajuint ajPatlistSeqGetSize (const AjPPatlistSeq thys) in ajPatlistSeqGetSize()
1097 AjBool ajPatlistRegexGetNext (AjPPatlistRegex thys, in ajPatlistRegexGetNext()
1129 void ajPatlistRegexRewind (AjPPatlistRegex thys) in ajPatlistRegexRewind()
1152 void ajPatlistSeqRewind (AjPPatlistSeq thys) in ajPatlistSeqRewind()
1202 void ajPatlistSeqRemoveCurrent (AjPPatlistSeq thys) in ajPatlistSeqRemoveCurrent()
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H A Dajtree.c325 AjPTree ajTreestrCopy(const AjPTree thys) in ajTreestrCopy()
348 AjPTree ajTreeCopy(const AjPTree thys) in ajTreeCopy()
376 ajuint ajTreeLength(const AjPTree thys) in ajTreeLength()
992 AjPTree ajTreeAddNode(AjPTree thys) in ajTreeAddNode()
1027 AjPTree ajTreeAddSubNode(AjPTree thys) in ajTreeAddSubNode()
1159 void ajTreeTrace(const AjPTree thys) in ajTreeTrace()
1193 void ajTreestrTrace(const AjPTree thys) in ajTreestrTrace()
1425 AjPTree ajTreeNext(const AjPTree thys) in ajTreeNext()
1445 AjPTree ajTreePrev(const AjPTree thys) in ajTreePrev()
1465 AjPTree ajTreeDown(const AjPTree thys) in ajTreeDown()
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H A Dajreport.c307 static void reportWriteEmbl(AjPReport thys, in reportWriteEmbl()
370 static void reportWriteGff(AjPReport thys, in reportWriteGff()
400 static void reportWritePir(AjPReport thys, in reportWritePir()
869 static void reportWriteDraw(AjPReport thys, in reportWriteDraw()
2770 AjPReport thys; in ajReportDel() local
3018 AjBool ajReportValid(AjPReport thys) in ajReportValid()
3099 AjBool ajReportWrite(AjPReport thys, in ajReportWrite()
3215 void ajReportClose(AjPReport thys) in ajReportClose()
3306 void ajReportWriteHeader(AjPReport thys, in ajReportWriteHeader()
3472 void ajReportWriteTail(AjPReport thys, in ajReportWriteTail()
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H A Dajalign.c553 static void alignWriteMsf(AjPAlign thys) in alignWriteMsf()
2346 AjPAlign thys; in ajAlignDel() local
2392 void ajAlignReset(AjPAlign thys) in ajAlignReset()
2639 AjBool ajAlignValid(AjPAlign thys) in ajAlignValid()
2736 void ajAlignWrite(AjPAlign thys) in ajAlignWrite()
2772 void ajAlignClose(AjPAlign thys) in ajAlignClose()
2800 void ajAlignWriteHeader(AjPAlign thys) in ajAlignWriteHeader()
2948 void ajAlignWriteTail(AjPAlign thys) in ajAlignWriteTail()
4073 void ajAlignSetType(AjPAlign thys) in ajAlignSetType()
4185 AjBool ajAlignSetRange(AjPAlign thys, in ajAlignSetRange()
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H A Dajrange.c96 AjPRange thys; in ajRangeNewI() local
378 AjPRange thys; in ajRangeNewRange() local
734 void ajRangeDel(AjPRange *thys) in ajRangeDel()
780 ajuint ajRangeGetSize(const AjPRange thys) in ajRangeGetSize()
881 AjBool ajRangeElementSet(AjPRange thys, ajuint element, in ajRangeElementSet()
916 AjBool ajRangeSetOffset(AjPRange thys, ajuint begin) in ajRangeSetOffset()
964 AjBool ajRangeSeqExtractList(const AjPRange thys, in ajRangeSeqExtractList()
1205 AjBool ajRangeSeqStuff(const AjPRange thys, AjPSeq seq) in ajRangeSeqStuff()
1520 AjBool ajRangeStrExtractList(const AjPRange thys, in ajRangeStrExtractList()
1881 AjBool ajRangeIsOrdered(const AjPRange thys) in ajRangeIsOrdered()
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H A Dajfeat.c508 AjPFeature ajFeatNew(AjPFeattable thys, in ajFeatNew()
642 AjPFeature ajFeatNewII(AjPFeattable thys, in ajFeatNewII()
1603 AjPFeattable thys; in ajFeattableDel() local
1682 static void featClear(AjPFeature thys) in featClear()
2015 void ajFeattableClear(AjPFeattable thys) in ajFeattableClear()
7615 AjPFeattable thys = NULL; in ajFeattableNew() local
8021 AjPFeattable thys = NULL; in ajFeattableNewDna() local
8052 AjPFeattable thys = NULL; in ajFeattableNewSeq() local
8086 AjPFeattable thys = NULL; in ajFeattableNewProt() local
8566 void ajFeatTrace(const AjPFeature thys) in ajFeatTrace()
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H A Dajtime.c158 AjPTime thys = NULL; in ajTimeNew() local
188 AjPTime thys; in ajTimeNewDayFmt() local
221 AjPTime thys = NULL; in ajTimeNewTime() local
246 AjPTime thys = NULL; in ajTimeNewToday() local
280 AjPTime thys = NULL; in ajTimeNewTodayFmt() local
379 time_t ajTimeGetTimetype(const AjPTime thys) in ajTimeGetTimetype()
520 AjBool ajTimeSetC(AjPTime thys, const char* timestr) in ajTimeSetC()
575 AjBool ajTimeSetS(AjPTime thys, const AjPStr timestr) in ajTimeSetS()
626 AjBool ajTimeSetLocal(AjPTime thys, const time_t timer) in ajTimeSetLocal()
791 void ajTimeTrace(const AjPTime thys) in ajTimeTrace()
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H A Dajquery.c212 AjPQuery thys; in ajQueryDel() local
585 AjBool ajQueryIsSet(const AjPQuery thys) in ajQueryIsSet()
751 AjBool ajQueryAddFieldAndS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldAndS()
877 AjBool ajQueryAddFieldEorS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldEorS()
940 AjBool ajQueryAddFieldNotS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldNotS()
1007 AjBool ajQueryAddFieldOrS(AjPQuery thys, const AjPStr field, in ajQueryAddFieldOrS()
1042 void ajQueryClear(AjPQuery thys) in ajQueryClear()
1126 AjBool ajQuerySetWild(AjPQuery thys) in ajQuerySetWild()
1219 void ajQueryStarclear(AjPQuery thys) in ajQueryStarclear()
1280 void ajQueryTrace(const AjPQuery thys) in ajQueryTrace()
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H A Dajtextread.c370 AjPTextin thys; in ajTextinDel() local
428 AjPTextin thys; in ajTextinDelNofile() local
507 void ajTextinClear(AjPTextin thys) in ajTextinClear()
570 void ajTextinClearNewfile(AjPTextin thys) in ajTextinClearNewfile()
597 void ajTextinClearNewinput(AjPTextin thys) in ajTextinClearNewinput()
622 void ajTextinClearNofile(AjPTextin thys) in ajTextinClearNofile()
751 void ajTextinStoreClear(AjPTextin thys, in ajTextinStoreClear()
795 AjBool ajTextinStoreReadline(AjPTextin thys, in ajTextinStoreReadline()
975 void ajTextinTrace(const AjPTextin thys) in ajTextinTrace()
3424 AjPTextall thys; in ajTextallDel() local
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H A Dajseqtype.c816 char ajSeqTypeNucS(const AjPStr thys) in ajSeqTypeNucS()
845 char ajSeqTypeDnaS(const AjPStr thys) in ajSeqTypeDnaS()
874 char ajSeqTypeRnaS(const AjPStr thys) in ajSeqTypeRnaS()
903 char ajSeqTypeGapdnaS(const AjPStr thys) in ajSeqTypeGapdnaS()
932 char ajSeqTypeGaprnaS(const AjPStr thys) in ajSeqTypeGaprnaS()
1007 char ajSeqTypeProtS(const AjPStr thys) in ajSeqTypeProtS()
1238 void ajSeqSetNuc(AjPSeq thys) in ajSeqSetNuc()
1271 void ajSeqSetProt(AjPSeq thys) in ajSeqSetProt()
1298 void ajSeqsetSetNuc(AjPSeqset thys) in ajSeqsetSetNuc()
1319 void ajSeqsetSetProt(AjPSeqset thys) in ajSeqsetSetProt()
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H A Dajfeatwrite.c301 AjBool ajFeattabOutOpen(AjPFeattabOut thys, const AjPStr ufo) in ajFeattabOutOpen()
346 AjPFile ajFeattabOutFile(const AjPFeattabOut thys) in ajFeattabOutFile()
366 AjPStr ajFeattabOutFilename(const AjPFeattabOut thys) in ajFeattabOutFilename()
389 AjBool ajFeattabOutIsOpen(const AjPFeattabOut thys) in ajFeattabOutIsOpen()
412 AjBool ajFeattabOutIsLocal(const AjPFeattabOut thys) in ajFeattabOutIsLocal()
438 AjBool ajFeattabOutSet(AjPFeattabOut thys, const AjPStr ufo) in ajFeattabOutSet()
633 void ajFeattabOutClear(AjPFeattabOut *thys) in ajFeattabOutClear()
681 AjPFeattabOut thys; in ajFeattabOutDel() local
2124 const AjPFeattable thys) in ajFeattableWriteSwiss()
3916 static void featDumpSwiss(const AjPFeature thys, AjPFile file, in featDumpSwiss()
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H A Dajxmlread.c262 AjPXmlin thys; in ajXmlinDel() local
320 void ajXmlinClear(AjPXmlin thys) in ajXmlinClear()
346 void ajXmlinQryC(AjPXmlin thys, const char* txt) in ajXmlinQryC()
369 void ajXmlinQryS(AjPXmlin thys, const AjPStr str) in ajXmlinQryS()
408 void ajXmlinTrace(const AjPXmlin thys) in ajXmlinTrace()
586 static AjBool xmlinQueryMatch(const AjPQuery thys, const AjPXml xml) in xmlinQueryMatch()
676 static AjBool xmlDefine(AjPXml thys, AjPXmlin xmlin) in xmlDefine()
2070 AjPXmlall thys; in ajXmlallDel() local
2129 void ajXmlallClear(AjPXmlall thys) in ajXmlallClear()
2176 const AjPStr ajXmlallGetxmlId(const AjPXmlall thys) in ajXmlallGetxmlId()
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H A Dajstr.c2127 AjPStr thys; in ajStrNewC() local
2158 AjPStr thys; in ajStrNewK() local
2236 AjPStr thys; in ajStrNewRes() local
2265 AjPStr thys; in ajStrNewResC() local
2295 AjPStr thys; in ajStrNewResS() local
2328 AjPStr thys; in ajStrNewResLenC() local
2364 AjPStr thys; in strClone() local
2401 AjPStr thys; in strCloneL() local
2528 AjPStr thys; in ajStrDel() local
2601 AjPStr thys; in ajStrDelStatic() local
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H A Dajseqread.c1507 AjPSeqin thys = ajSeqinNew(); in ajSeqinNewQueryC() local
1530 AjPSeqin thys = ajSeqinNew(); in ajSeqinNewQueryS() local
1570 AjPSeqin thys; in ajSeqinDel() local
1659 AjPSeqin thys; in ajSeqinUsa() local
2032 void ajSeqinClearPos(AjPSeqin thys) in ajSeqinClearPos()
2057 void ajSeqinClear(AjPSeqin thys) in ajSeqinClear()
11146 SeqPMsfData thys; in seqMsfDataDel() local
11198 SeqPMsfItem thys; in seqMsfItemDel() local
19578 SeqPStockholm thys = NULL; in stockholmNew() local
19767 SeqPSelex thys = NULL; in selexNew() local
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/dports/astro/gpsbabel/gpsbabel-gpsbabel_1_7_0/jeeps/
H A Dgpsmem.cc65 void GPS_Pvt_Del(GPS_PPvt_Data* thys) in GPS_Pvt_Del()
110 void GPS_Almanac_Del(GPS_PAlmanac* thys) in GPS_Almanac_Del()
151 void GPS_Track_Del(GPS_PTrack* thys) in GPS_Track_Del()
241 void GPS_Way_Del(GPS_PWay* thys) in GPS_Way_Del()
280 void GPS_Lap_Del(GPS_PLap* thys) in GPS_Lap_Del()
318 void GPS_Course_Del(GPS_PCourse* thys) in GPS_Course_Del()
357 void GPS_Course_Lap_Del(GPS_PCourse_Lap* thys) in GPS_Course_Lap_Del()
396 void GPS_Course_Point_Del(GPS_PCourse_Point* thys) in GPS_Course_Point_Del()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/graphics/
H A Dajhist.c342 void ajHistDisplay(const AjPHist thys) in ajHistDisplay()
730 void ajHistSetMono(AjPHist thys, AjBool set) in ajHistSetMono()
752 void ajHistSetRlabelC(AjPHist thys, const char* txt) in ajHistSetRlabelC()
774 void ajHistSetTitleC(AjPHist thys, const char* txt) in ajHistSetTitleC()
796 void ajHistSetXlabelC(AjPHist thys, const char* txt) in ajHistSetXlabelC()
818 void ajHistSetYlabelC(AjPHist thys, const char* txt) in ajHistSetYlabelC()
841 void ajHistSetmultiColour(AjPHist thys, ajuint indexnum, ajint colour) in ajHistSetmultiColour()
1109 void ajHistDataAdd(AjPHist thys, ajuint indexnum, PLFLT *data) in ajHistDataAdd()
1216 __deprecated void ajHistSetBlackandWhite(AjPHist thys, AjBool set) in ajHistSetBlackandWhite()
1239 __deprecated void ajHistSetXAxisC(AjPHist thys, const char* strng) in ajHistSetXAxisC()
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H A Dajgraph.c961 static void GraphSetName(const AjPGraph thys, in GraphSetName()
3358 AjPGraph thys = NULL; in ajGraphicsUnused() local
3957 void ajGraphClear(AjPGraph thys) in ajGraphClear()
4810 AjBool ajGraphIsData(const AjPGraph thys) in ajGraphIsData()
5204 static void GraphDraw(const AjPGraph thys) in GraphDraw()
5298 static void GraphPrint(const AjPGraph thys) in GraphPrint()
5352 void ajGraphTrace(const AjPGraph thys) in ajGraphTrace()
5623 AjPGraph thys; in ajGraphxyDel() local
5916 void ajGraphxySetRanges(AjPGraph thys) in ajGraphxySetRanges()
6708 AjPGraphdata thys; in ajGraphdataDel() local
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/dports/astro/gpsbabel14/gpsbabel-1.4.4/jeeps/
H A Dgpsmem.c72 void GPS_Packet_Del(GPS_PPacket* thys) in GPS_Packet_Del()
114 void GPS_Pvt_Del(GPS_PPvt_Data* thys) in GPS_Pvt_Del()
159 void GPS_Almanac_Del(GPS_PAlmanac* thys) in GPS_Almanac_Del()
200 void GPS_Track_Del(GPS_PTrack* thys) in GPS_Track_Del()
290 void GPS_Way_Del(GPS_PWay* thys) in GPS_Way_Del()
329 void GPS_Lap_Del(GPS_PLap* thys) in GPS_Lap_Del()
367 void GPS_Course_Del(GPS_PCourse* thys) in GPS_Course_Del()
406 void GPS_Course_Lap_Del(GPS_PCourse_Lap* thys) in GPS_Course_Lap_Del()
445 void GPS_Course_Point_Del(GPS_PCourse_Point* thys) in GPS_Course_Point_Del()
/dports/astro/opencpn/OpenCPN-5.2.4/libs/garmin/jeeps/
H A Dgpsmem.c73 void GPS_Packet_Del(GPS_PPacket *thys) in GPS_Packet_Del()
116 void GPS_Pvt_Del(GPS_PPvt_Data *thys) in GPS_Pvt_Del()
162 void GPS_Almanac_Del(GPS_PAlmanac *thys) in GPS_Almanac_Del()
204 void GPS_Track_Del(GPS_PTrack *thys) in GPS_Track_Del()
295 void GPS_Way_Del(GPS_PWay *thys) in GPS_Way_Del()
335 void GPS_Lap_Del(GPS_PLap *thys) in GPS_Lap_Del()
374 void GPS_Course_Del(GPS_PCourse *thys) in GPS_Course_Del()
414 void GPS_Course_Lap_Del(GPS_PCourse_Lap *thys) in GPS_Course_Lap_Del()
454 void GPS_Course_Point_Del(GPS_PCourse_Point *thys) in GPS_Course_Point_Del()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/acd/
H A Dajacd.c7279 static void acdSetXxxx(AcdPAcd thys) in acdSetXxxx()
7337 static void acdSetAppl(AcdPAcd thys) in acdSetAppl()
7459 static void acdSetSec(AcdPAcd thys) in acdSetSec()
7545 static void acdSetVar(AcdPAcd thys) in acdSetVar()
8286 static void acdSetCpdb(AcdPAcd thys) in acdSetCpdb()
10573 static void acdSetInt(AcdPAcd thys) in acdSetInt()
11170 static void acdSetObo(AcdPAcd thys) in acdSetObo()
13562 static void acdSetRel(AcdPAcd thys) in acdSetRel()
14180 static void acdSetSeq(AcdPAcd thys) in acdSetSeq()
16896 static void acdSetUrl(AcdPAcd thys) in acdSetUrl()
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembshow.c269 EmbPShow thys; in embShowDel() local
629 void embShowAddBlank(EmbPShow thys) in embShowAddBlank()
656 void embShowAddTicks(EmbPShow thys) in embShowAddTicks()
684 void embShowAddTicknum(EmbPShow thys) in embShowAddTicknum()
1469 static void showFillSeq(const EmbPShow thys, in showFillSeq()
1609 static void showFillBlank(const EmbPShow thys, in showFillBlank()
1758 static void showFillComp(const EmbPShow thys, in showFillComp()
1836 static void showFillTran(const EmbPShow thys, in showFillTran()
2133 static void showFillRE(const EmbPShow thys, in showFillRE()
2901 static void showFillFT(const EmbPShow thys, in showFillFT()
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