| /dports/biology/bbmap/bbmap/current/dna/ |
| H A D | ChromToFasta.java | 62 TextStreamWriter tsw=new TextStreamWriter(outfile, true, false, false); in main() local
87 …riteContigs(ChromosomeArray cha, int contig, int trigger, int fastaBlocklen, TextStreamWriter tsw){ in writeContigs()
125 public static void writeContig(StringBuilder sb, TextStreamWriter tsw, int blocklen){ in writeContig()
133 TextStreamWriter tsw=new TextStreamWriter(fname, true, false, false); in writeChrom() local
140 public static void writeChrom(ChromosomeArray cha, TextStreamWriter tsw, int blocklen){ in writeChrom()
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | PrintTaxonomy.java | 178 TextStreamWriter tsw=null; in process() local
216 void processNames(final TextStreamWriter tsw){ in processNames()
227 void processFile(final TextFile tf, final TextStreamWriter tsw){ in processFile()
242 void processReads(final TextStreamWriter tsw){ in processReads()
313 void printTaxonomy(String name, final TextStreamWriter tsw){ in printTaxonomy()
337 void printTaxLevel(String name, final TextStreamWriter tsw){ in printTaxLevel()
368 void printTaxonomy(TaxNode tn, final TextStreamWriter tsw){ in printTaxonomy()
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| /dports/security/klee/klee-2.2/unittests/TreeStream/ |
| H A D | TreeStreamTest.cpp | 12 TreeStreamWriter tsw("tsw1.out"); in TEST() local
33 TreeStreamWriter tsw("tsw2.out"); in TEST() local
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| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | Concatenator.java | 12 TextStreamWriter tsw=new TextStreamWriter(args[1], false, false, true); in main() local
20 public static void writeFile(String fname, TextStreamWriter tsw){ in writeFile()
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| H A D | FixChr.java | 15 TextStreamWriter tsw=new TextStreamWriter(out, true, false, true); in main() local
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| H A D | SelectReads.java | 47 TextStreamWriter tsw=new TextStreamWriter(args[1], false, false, true); in main() local
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| H A D | MergeCoverageOTU.java | 55 TextStreamWriter tsw=new TextStreamWriter(out, true, false, false); in main() local
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| H A D | ConcatenateFiles.java | 40 TextStreamWriter tsw=new TextStreamWriter(outname, true, false, true); in concatenatePattern() local
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| /dports/biology/bbmap/bbmap/current/pacbio/ |
| H A D | SortSites.java | 99 TextStreamWriter tsw=wmap.get(key); in write() local
136 TextStreamWriter tsw=wmap.get(k); in finish() local
159 TextStreamWriter tsw=wmap.get(k); in finishByPosition() local
227 TextStreamWriter tsw=wmap.get(k); in finishByID() local
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| H A D | MergeReadsAndGenome.java | 107 TextStreamWriter tsw=new TextStreamWriter(out, overwrite, false, false); in main() local
141 public static long appendReads(ConcurrentReadInputStream cris, TextStreamWriter tsw, long id){ in appendReads()
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| H A D | SplitOffPerfectContigs.java | 100 TextStreamWriter tsw=new TextStreamWriter(dest, false, true, false); in main() local
176 TextStreamWriter tsw, int buildout, int tipbuffer){ in writeContigs()
330 public static void writeContig(CharSequence sb, TextStreamWriter tsw, int blocklen){ in writeContig()
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| H A D | StackSites2.java | 290 TextStreamWriter tsw=g.wmap.get(k); in finish() local
302 TextStreamWriter tsw=g.wmap.get(k); in finish() local
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| H A D | PartitionFastaFile.java | 40 TextStreamWriter tsw=new TextStreamWriter(outfile.replace("#", ""+pnum), true, false, false); in split() local
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| /dports/biology/bbmap/bbmap/current/prok/ |
| H A D | FetchProks.java | 29 TextStreamWriter tsw=new TextStreamWriter(out, true, false, false, FileFormat.TEXT); in main() local
114 final TextStreamWriter tsw; field in FetchProks.ProcessThread
140 static int examineSpecies(String baseAddress, TextStreamWriter tsw){ in examineSpecies()
172 static int examineAssemblies(String baseAddress, TextStreamWriter tsw, String speciesName){ in examineAssemblies()
281 static int examineAssembly(Stats stats, TextStreamWriter tsw, String speciesName){ in examineAssembly()
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| /dports/misc/rump/buildrump.sh-b914579/src/sys/altq/ |
| H A D | altq_cdnr.c | 718 struct tswtcm *tsw; in tswtcm_create() local
759 tswtcm_destroy(struct tswtcm *tsw) in tswtcm_destroy()
775 struct tswtcm *tsw = (struct tswtcm *)cb; in tswtcm_input() local
1018 struct tswtcm *tsw = (struct tswtcm *)cb; in cdnrcmd_tcm_stats() local
1033 struct tswtcm *tsw; in cdnrcmd_add_tswtcm() local
1055 struct tswtcm *tsw; in cdnrcmd_modify_tswtcm() local
1081 struct tswtcm *tsw; in cdnrcmd_get_stats() local
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | SendSketch.java | 338 TextStreamWriter tsw=new TextStreamWriter(ffout); in processRemote_old() local
459 TextStreamWriter tsw=new TextStreamWriter(ffout); in processRemote() local
616 TextStreamWriter tsw=new TextStreamWriter(ffout); in processLocal() local
656 TextStreamWriter tsw=new TextStreamWriter(ffout); in processRefMode() local
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| /dports/audio/py-zita-jacktools/zita-jacktools-1.5.3/examples/utils/ |
| H A D | logsweep.py | 25 def genlogsweep (amp, fmin, fmax, fsamp, tfi, tsw, tfo): argument
|
| /dports/databases/grass7/grass-7.8.6/imagery/i.biomass/ |
| H A D | solar_day.c | 12 double solar_day(double lat, double doy, double tsw) in solar_day()
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | CoveragePileup.java | 458 private void processViaStreamer(ByteStreamWriter tsw){ in processViaStreamer()
482 private void processViaByteFile(ByteFile tf, ByteStreamWriter tsw){ in processViaByteFile()
501 public void processHeader(ByteFile tf, ByteStreamWriter tsw){ in processHeader()
649 TextStreamWriter tsw=new TextStreamWriter(fname_out, overwrite, false, true); in processOrfsFasta() local
1439 ByteStreamWriter tsw=new ByteStreamWriter(fname, overwrite, false, false); in writeHist() local
1470 ByteStreamWriter tsw=new ByteStreamWriter(fname, overwrite, false, true); in writeCoveragePerBase() local
1517 ByteStreamWriter tsw=new ByteStreamWriter(fname, overwrite, false, true); in writeCoveragePerBaseConcise() local
1554 TextStreamWriter tsw=new TextStreamWriter(fname, overwrite, false, false); in writeCoveragePerBaseBinned() local
1603 TextStreamWriter tsw=new TextStreamWriter(fname, overwrite, false, false); in writeCoveragePerBaseBinned2() local
1777 TextStreamWriter tsw=new TextStreamWriter(fname, overwrite, false, false); in writeCoveragePerBaseNormalized() local
[all …]
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| H A D | CorrelateBarcodes.java | 305 TextStreamWriter tsw=new TextStreamWriter(ffcor); in process() local
320 TextStreamWriter tsw=new TextStreamWriter(ffaq); in process() local
337 TextStreamWriter tsw=new TextStreamWriter(ffmq); in process() local
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| H A D | CountGC.java | 177 final TextStreamWriter tsw=(out==null ? null : new TextStreamWriter(out, true, false, false)); in countFasta() local
247 final TextStreamWriter tsw=(out==null ? null : new TextStreamWriter(out, true, false, false)); in countFastq() local
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| H A D | SealRefInfo.java | 140 final TextStreamWriter tsw=new TextStreamWriter(fname, ow, false, false); in writeRefStats() local
198 final TextStreamWriter tsw=new TextStreamWriter(fname, ow, false, false); in writeRefStats_BBSplitStyle() local
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| /dports/science/nwchem-data/nwchem-7.0.2-release/src/argos/ |
| H A D | argos_cafe_proper.F | 1 subroutine argos_cafe_proper(vol,tmp,tmpw,tmps,prs,tsw,tss,psc, argument
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| /dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/argos/ |
| H A D | argos_cafe_proper.F | 1 subroutine argos_cafe_proper(vol,tmp,tmpw,tmps,prs,tsw,tss,psc, argument
|
| /dports/databases/grass7/grass-7.8.6/imagery/i.eb.netrad/ |
| H A D | r_net.c | 9 double e0, double tsw, double doy, double utc, in r_net()
|