| /dports/math/igraph/igraph-0.9.5/tests/unit/ |
| H A D | igraph_motifs_randesu_no.out | 7 Full graph of 50 vertices, motif size 3 (50 choose 3 = 19600):
10 Full graph of 50 vertices, motif size 3, cut_prob 0.1 at each level:
13 Full graph of 50 vertices, motif size 4 (50 choose 4 = 230300:
16 Triangle and a vertex, motif size 4:
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/drag_help/ |
| H A D | Makefile.am | 28 SUFFIXES = .motif .mo
31 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
35 motif_TESTS = $(test1_OBJECTS:.o=.motif)
41 .mo.motif:
44 motif-tests: ${motif_TESTS}
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/filesb/ |
| H A D | Makefile.am | 32 SUFFIXES = .motif .mo
35 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
39 motif_TESTS = $(OBJECTS:.o=.motif)
44 .mo.motif:
47 motif-tests: ${motif_TESTS}
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/list/ |
| H A D | Makefile.am | 30 SUFFIXES = .motif .mo
33 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
37 motif_TESTS = $(OBJECTS:.o=.motif)
42 .mo.motif:
45 motif-tests: ${motif_TESTS}
|
| /dports/games/xshisen/xshisen-1.51/ |
| H A D | INSTALL | 14 options. You need only --with-motif (if you want) normally.
18 --with-motif Use Motif widgets.
19 --with-motif-include=DIR
21 --with-motif-lib=DIR
62 ./configure --with-motif
72 --with-motif \
73 --with-motif-include=/usr/include/Motif1.2 \
74 --with-motif-lib=/usr/lib/Motif1.2_R6
|
| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/constraints/ |
| H A D | ligand.c | 311 char *sequence, *motif, *motif_alt; in vrna_sc_add_hi_motif() local
316 motif = NULL; in vrna_sc_add_hi_motif()
351 if ((motif[0] != '(') || (motif[strlen(motif) - 1] != ')') || (motif[cp - 2] != '(') || in vrna_sc_add_hi_motif()
352 (motif[cp - 1] != ')')) { in vrna_sc_add_hi_motif()
362 motif_alt[strlen(motif) - 1] = ')'; in vrna_sc_add_hi_motif()
363 motif_alt[strlen(motif)] = '\0'; in vrna_sc_add_hi_motif()
369 if ((motif[0] != '(') || (motif[strlen(motif) - 1] != ')')) { in vrna_sc_add_hi_motif()
376 motif_alt[strlen(motif) - 1] = ')'; in vrna_sc_add_hi_motif()
377 motif_alt[strlen(motif)] = '\0'; in vrna_sc_add_hi_motif()
414 free(motif); in vrna_sc_add_hi_motif()
[all …]
|
| /dports/deskutils/xmdiary/xmdiary-3.0.3/ |
| H A D | XDiary.map | 143 ! Colormap motif
144 motif.$color1: Black
145 motif.$color2: #9db5cd
146 motif.$color3: White
147 motif.$color4: #d4d8e8
148 motif.$color5: Black
149 motif.$color6: #7c8498
150 motif.$color7: #9db5cd
152 motif.$color9: Black
155 motif.$colorBgList: \
[all …]
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/drawnbutton/ |
| H A D | Makefile.am | 26 SUFFIXES = .motif .mo
29 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
41 motif_TESTS = $(OBJECTS:.o=.motif)
46 .mo.motif:
49 motif-tests: ${motif_TESTS}
|
| /dports/biology/wise/wise2.4.1/src/models/ |
| H A D | motifmatrixdp.h | 8 #define MOTIF_MATRIX_IN(motif,i,j,score) (motif->mat[i][j] == 0 ? 0 : (score)) argument
21 MotifConsMatrix* motif; member
104 …re * out,ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
123 …re * out,ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
149 …ifMatrix(ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
169 …ifMatrix(ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
202 …ifMatrix(ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
378 …ifMatrix(ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
380 …rix_only(ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* …
|
| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/ |
| H A D | swisspfam.data | 4 …------- ---------- (1058) PF00076 RNA recognition motif. (aka RRM, RBD, or…
8 …------- ---------- (1058) PF00076 RNA recognition motif. (aka RRM, RBD, or…
10 …---- ---------- (1058) PF00076 RNA recognition motif. (aka RRM, RBD, or…
12 …----- --------- (1058) PF00076 RNA recognition motif. (aka RRM, RBD, or…
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Mrm/mrm/ |
| H A D | Makefile.am | 7 SUFFIXES = .uid .uil .motif .mo
39 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p* *.uid
43 motif_TESTS = $(OBJECTS:.o=.motif)
48 .mo.motif:
51 motif-tests: ${motif_TESTS}
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/form/ |
| H A D | Makefile.am | 42 SUFFIXES = .motif .mo
45 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
49 motif_TESTS = $(OBJECTS:.o=.motif)
54 .mo.motif:
57 motif-tests: ${motif_TESTS}
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Mrm/xmp/ |
| H A D | Makefile.am | 31 SUFFIXES = .motif .mo
37 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
41 motif_TESTS = $(OBJECTS:.o=.motif)
46 .mo.motif:
49 motif-tests: ${motif_TESTS}
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/Xm/rowcolumn/ |
| H A D | Makefile.am | 33 SUFFIXES = .motif .mo
37 motif_TESTS = $(OBJECTS:.o=.motif)
42 .mo.motif:
45 motif-tests: ${motif_TESTS}
51 rm -rf *.motif *.mo LessTif LessTif.sum LessTif.log site.exp xlab/*.p*
|
| /dports/x11-toolkits/open-motif/motif-2.3.8/tools/wml/ |
| H A D | Makefile.am | 3 EXTRA_DIST = README wmllex.c wmllex.l motif.wml Uil.y Uil.c Uil.h UilLexPars.h UilLexPars.c
14 TABLE = motif.wml
15 WMDTABLE = motif.wmd
63 all: motif.wmd
65 motif.wmd: wmldbcreate
66 ./wmldbcreate -o motif.wmd
|
| /dports/math/geogebra/GeoGebra-Linux-Portable-5-0-625-0/jre1.8.0_121-i686/jre/lib/ |
| H A D | fontconfig.Ubuntu.properties | 36 #allfonts.umingcn.motif=AR PL UMing CN
38 #allfonts.uminghk.motif=AR PL UMing HK
40 #allfonts.umingtw.motif=AR PL UMing TW
43 #allfonts.wqy-zenhei.motif=WenQuanYi Zen Hei
60 #serif.plain.latin-1.motif=LuxiSerif-Regular
67 #serif.bold.latin-1.motif=LuxiSerif-Bold
74 #serif.italic.latin-1.motif=LuxiSerif-Oblique
95 #sansserif.bold.latin-1.motif=LuxiSans-Bold
123 #monospaced.bold.latin-1.motif=LuxiMono-Bold
144 #dialog.plain.latin-1.motif=LuxiSans-Regular
[all …]
|
| /dports/math/geogebra/GeoGebra-Linux-Portable-5-0-625-0/jre1.8.0_121-x86_64/jre/lib/ |
| H A D | fontconfig.Ubuntu.properties | 36 #allfonts.umingcn.motif=AR PL UMing CN
38 #allfonts.uminghk.motif=AR PL UMing HK
40 #allfonts.umingtw.motif=AR PL UMing TW
43 #allfonts.wqy-zenhei.motif=WenQuanYi Zen Hei
60 #serif.plain.latin-1.motif=LuxiSerif-Regular
67 #serif.bold.latin-1.motif=LuxiSerif-Bold
74 #serif.italic.latin-1.motif=LuxiSerif-Oblique
95 #sansserif.bold.latin-1.motif=LuxiSans-Bold
123 #monospaced.bold.latin-1.motif=LuxiMono-Bold
144 #dialog.plain.latin-1.motif=LuxiSans-Regular
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/emboss/acd/ |
| H A D | patmatdb.acd | 2 documentation: "Search protein sequences with a sequence motif"
7 (by motif or pattern)"
28 string: motif [
31 information: "Protein motif to search for"
40 relations: "EDAM_data:2071 Sequence motif (protein)"
|
| /dports/biology/py-biopython/biopython-1.79/Bio/motifs/ |
| H A D | xms.py | 39 motif = motifs.Motif(alphabet="GATC", counts=nucleotide_counts)
40 motif.name = motif_name
42 self.record.append(motif)
93 return "\n".join(str(motif) for motif in self)
|
| /dports/games/xlennart/xlennart-1.1.1/ |
| H A D | configure.in | 24 AC_ARG_ENABLE(motif, optenable
25 [ --enable-motif build with the Motif widget set])
32 AC_CHECK_LIB(Xm, XmGetPixmap, motif=yes, , -lXt -lX11)
34 if test "X$motif" = X"yes"; then
40 WIDGET_OBJS="$WIDGET_OBJS x11-motif.o"
79 if test "X$motif" = X"yes" -o "X$athena" = X"yes"; then
|
| /dports/audio/praat/praat-6.2.03/sys/ |
| H A D | GuiControl.cpp | 51 #elif motif
134 #elif motif
154 #elif motif
169 #elif motif
184 #elif motif
199 #elif motif
214 #elif motif
223 #elif motif
|
| H A D | GuiOptionMenu.cpp | 28 #elif motif
58 #elif motif in v_show()
75 #elif motif in GuiOptionMenu_init()
98 #elif motif in GuiOptionMenu_init()
116 #if motif
136 #elif motif in GuiOptionMenu_addOption()
152 #elif motif in GuiOptionMenu_getValue()
168 #elif motif in GuiOptionMenu_setValue()
|
| /dports/biology/vt/vt-0.57721/ |
| H A D | motif_tree.h | 69 std::string motif;
74 CandidateMotif(std::string motif, float score, uint32_t len, float fit) in CandidateMotif() argument
76 this->motif = motif; in CandidateMotif()
171 bool exist_two_copies(std::string& seq, std::string& motif);
|
| /dports/biology/checkm/CheckM-1.0.18/scripts/ |
| H A D | findCircularSeqs.py | 50 def matchMotif(self, motif, seq, overlap, motifErrors): argument
52 posEndMotif = seq.rfind(motif, max(0, len(seq) - overlap))
57 for i in xrange(len(seq)-overlap, len(seq)-len(motif)):
58 diff = self.hamming(motif, seq[i:i+len(motif)])
|
| /dports/games/xbill/xbill-2.1/ |
| H A D | configure.in | 25 AC_ARG_ENABLE(motif, optenable
26 [ --enable-motif build with the Motif widget set])
33 AC_CHECK_LIB(Xm, XmGetPixmap, motif=yes, , -lXt -lX11)
35 if test "X$motif" = X"yes"; then
41 WIDGET_OBJS="$WIDGET_OBJS x11-motif.o"
80 if test "X$motif" = X"yes" -o "X$athena" = X"yes"; then
|