Home
last modified time | relevance | path

Searched refs:CDS (Results 201 – 225 of 2769) sorted by relevance

12345678910>>...111

/dports/biology/bcftools/bcftools-1.14/test/csq/ENST00000422159/
H A Dshort.gff6 3 havana CDS 278 328 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=ENSP…
8 3 havana CDS 4196 4312 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=EN…
9 3 havana CDS 4507 4614 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=EN…
/dports/biology/bio-mocha/bcftools-1.14/test/csq/ENST00000422159/
H A Dshort.gff6 3 havana CDS 278 328 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=ENSP…
8 3 havana CDS 4196 4312 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=EN…
9 3 havana CDS 4507 4614 . - 0 ID=CDS:ENSP00000405464;Parent=transcript:ENST00000422159;protein_id=EN…
/dports/biology/py-gffutils/gffutils-0.10.1/gffutils/test/data/
H A Dhybrid1.gff38 chr17 UCSC CDS 62468039 62468236 . - 1 Parent=A00469
9 chr17 UCSC CDS 62468490 62468654 . - 2 Parent=A00469
10 chr17 UCSC CDS 62468747 62468866 . - 1 Parent=A00469
11 chr17 UCSC CDS 62469076 62469236 . - 1 Parent=A00469
12 chr17 UCSC CDS 62469497 62469506 . - 0 Parent=A00469
/dports/biology/bio-mocha/bcftools-1.14/test/csq/ENST00000518414/
H A DENST00000518414.gff7 8 havana CDS 8495 8506 . + 0 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=EN…
9 8 havana CDS 10486 10612 . + 0 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=…
11 8 havana CDS 11321 11400 . + 2 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=…
/dports/biology/bcftools/bcftools-1.14/test/csq/ENST00000518414/
H A DENST00000518414.gff7 8 havana CDS 8495 8506 . + 0 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=EN…
9 8 havana CDS 10486 10612 . + 0 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=…
11 8 havana CDS 11321 11400 . + 2 ID=CDS:ENSP00000430552;Parent=transcript:ENST00000518414;protein_id=…
/dports/biology/p5-Bio-GFF3/Bio-GFF3-2.0/t/data/
H A DknownGene_out_of_order.gff32 chr17 UCSC CDS 62468039 62468236 . - 1 Parent=A00469
4 chr17 UCSC CDS 62468490 62468654 . - 2 Parent=A00469
7 chr17 UCSC CDS 62468747 62468866 . - 1 Parent=A00469
8 chr17 UCSC CDS 62469076 62469236 . - 1 Parent=A00469
9 chr17 UCSC CDS 62469497 62469506 . - 0 Parent=A00469
15 chr9 UCSC CDS 90518842 90519167 . - 1 Parent=AB000114
16 chr9 UCSC CDS 90520309 90521248 . - 0 Parent=AB000114
H A Dgff3_with_syncs.dumped_result110 'CDS:Solyc00g005000.2.1.1'
128 'type' => 'CDS'
185 'CDS:Solyc00g005000.2.1.2'
203 'type' => 'CDS'
327 'CDS:Solyc00g005020.1.1.1'
345 'type' => 'CDS'
402 'CDS:Solyc00g005020.1.1.2'
420 'type' => 'CDS'
477 'CDS:Solyc00g005020.1.1.3'
495 'type' => 'CDS'
/dports/biology/bio-mocha/bcftools-1.14/test/csq/ENST00000357367/
H A DENST00000357367.gff5 1 ensembl_havana CDS 357 918 . - 1 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;protein…
7 1 ensembl_havana CDS 1833 2408 . - 1 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;prote…
8 1 ensembl_havana CDS 2791 3077 . - 0 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;prote…
/dports/biology/bcftools/bcftools-1.14/test/csq/ENST00000357367/
H A DENST00000357367.gff5 1 ensembl_havana CDS 357 918 . - 1 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;protein…
7 1 ensembl_havana CDS 1833 2408 . - 1 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;prote…
8 1 ensembl_havana CDS 2791 3077 . - 0 ID=CDS:ENSP00000349931;Parent=transcript:ENST00000357367;prote…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/5colftblreader_test_cases/
H A Dgb-7414.tbl4 19 1719 CDS
16 6 1415 CDS
22 11 769 CDS
27 11 36 CDS
34 19 1719 CDS
/dports/biology/bio-mocha/bcftools-1.14/test/csq/ENST00000479739/
H A DENST00000479739.gff9 2 havana CDS 13260 13482 . - 1 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
11 2 havana CDS 15392 15520 . - 1 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
13 2 havana CDS 16451 16563 . - 0 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
14 2 havana CDS 25089 25091 . - 0 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
/dports/biology/bcftools/bcftools-1.14/test/csq/ENST00000479739/
H A DENST00000479739.gff9 2 havana CDS 13260 13482 . - 1 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
11 2 havana CDS 15392 15520 . - 1 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
13 2 havana CDS 16451 16563 . - 0 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
14 2 havana CDS 25089 25091 . - 0 ID=CDS:ENSP00000441266;Parent=transcript:ENST00000479739;protein_id=…
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/
H A Dgencode.and.this.is.a.valid.one.too.table.gtf10 KI270734.1 ENSEMBL CDS 156289 156446 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
13 KI270734.1 ENSEMBL CDS 150987 151021 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
15 KI270734.1 ENSEMBL CDS 150350 150499 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
17 KI270734.1 ENSEMBL CDS 148414 148478 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
19 KI270734.1 ENSEMBL CDS 148116 148232 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
21 KI270734.1 ENSEMBL CDS 147624 147703 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
23 KI270734.1 ENSEMBL CDS 146640 146721 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
25 KI270734.1 ENSEMBL CDS 145004 145096 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
27 KI270734.1 ENSEMBL CDS 144749 144895 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
29 KI270734.1 ENSEMBL CDS 143614 143789 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615…
[all …]
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/__testing/
H A Dlongest_orfs.gff35 CUFF.38.1 transdecoder CDS 3859 5772 . + 0 ID=cds.CUFF.38.1.p1;Parent=CUFF.38.1.p1
12 CUFF.38.1 transdecoder CDS 1759 3411 . + 0 ID=cds.CUFF.38.1.p2;Parent=CUFF.38.1.p2
19 CUFF.38.1 transdecoder CDS 5907 7274 . - 0 ID=cds.CUFF.38.1.p3;Parent=CUFF.38.1.p3
32 CUFF.38.1 transdecoder CDS 6937 7326 . + 0 ID=cds.CUFF.38.1.p5;Parent=CUFF.38.1.p5
39 CUFF.24.1 transdecoder CDS 689 2356 . + 0 ID=cds.CUFF.24.1.p1;Parent=CUFF.24.1.p1
46 CUFF.35.1 transdecoder CDS 542 994 . + 0 ID=cds.CUFF.35.1.p1;Parent=CUFF.35.1.p1
53 CUFF.17.1 transdecoder CDS 231 1286 . + 0 ID=cds.CUFF.17.1.p1;Parent=CUFF.17.1.p1
67 CUFF.49.1 transdecoder CDS 214 804 . + 0 ID=cds.CUFF.49.1.p2;Parent=CUFF.49.1.p2
122 CUFF.3.1 transdecoder CDS 207 1073 . + 0 ID=cds.CUFF.3.1.p1;Parent=CUFF.3.1.p1
371 CUFF.5.1 transdecoder CDS 207 713 . + 0 ID=cds.CUFF.5.1.p1;Parent=CUFF.5.1.p1
[all …]
/dports/biology/bcftools/bcftools-1.14/test/csq/ENST00000423372/
H A Dsnps.vcf24 1 3621 . G A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-9
25 1 3622 . C A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-8
26 1 3626 . A C . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-4
27 1 3627 . C A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-3
28 1 3628 . A C . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-2
29 …. EXP=@3632;EXPL=stop_lost|AL627309.1|ENST00000423372|protein_coding|-|260*>260C|3630T>A;type=CDS:0
30 …T>A+3632A>C;EXPL=stop_lost|AL627309.1|ENST00000423372|protein_coding|-|260*>260G|3632A>C;type=CDS:2
31 … . EXP=@3634;EXPL=missense|AL627309.1|ENST00000423372|protein_coding|-|259L>259F|3633T>A;type=CDS:3
32 …A+3634A>C;EXPL=stop_gained|AL627309.1|ENST00000423372|protein_coding|-|259L>259*|3634A>C;type=CDS:4
33 …638 . T A . . EXP=missense|AL627309.1|ENST00000423372|protein_coding|-|258N>258Y|3638T>A;type=CDS:8
[all …]
/dports/biology/bio-mocha/bcftools-1.14/test/csq/ENST00000423372/
H A Dsnps.vcf24 1 3621 . G A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-9
25 1 3622 . C A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-8
26 1 3626 . A C . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-4
27 1 3627 . C A . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-3
28 1 3628 . A C . . EXP=3_prime_utr|AL627309.1|ENST00000423372|protein_coding;type=CDS:-2
29 …. EXP=@3632;EXPL=stop_lost|AL627309.1|ENST00000423372|protein_coding|-|260*>260C|3630T>A;type=CDS:0
30 …T>A+3632A>C;EXPL=stop_lost|AL627309.1|ENST00000423372|protein_coding|-|260*>260G|3632A>C;type=CDS:2
31 … . EXP=@3634;EXPL=missense|AL627309.1|ENST00000423372|protein_coding|-|259L>259F|3633T>A;type=CDS:3
32 …A+3634A>C;EXPL=stop_gained|AL627309.1|ENST00000423372|protein_coding|-|259L>259*|3634A>C;type=CDS:4
33 …638 . T A . . EXP=missense|AL627309.1|ENST00000423372|protein_coding|-|258N>258Y|3638T>A;type=CDS:8
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gff3writer_test_cases/
H A Dmodevidence-gnomon.annot.gff310 …29286.1 Gnomon CDS 2018 2055 . + 0 ID=cds-NW_004929286.1:2018..3467;Parent=rna-NW_004929286.1:1559…
11 …29286.1 Gnomon CDS 2423 2549 . + 1 ID=cds-NW_004929286.1:2018..3467;Parent=rna-NW_004929286.1:1559…
12 …29286.1 Gnomon CDS 3231 3467 . + 0 ID=cds-NW_004929286.1:2018..3467;Parent=rna-NW_004929286.1:1559…
/dports/biology/wise/wise2.4.1/src/models/
H A Dgenomewise9.dy66 source CDS
81 source CDS offj="2"
85 source CDS offj="4"
101 query_label CDS
108 source CDS offj="8"
119 source CDS offj="9"
130 source CDS offj="10"
138 source CDS
148 source CDS
194 source CDS offj="0"
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/
H A Dgencode.v19.MUC16.non-basic.gtf9 chr19 HAVANA CDS 9002501 9002673 . - 1 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
11 chr19 HAVANA CDS 9002153 9002188 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
13 chr19 HAVANA CDS 9001831 9001896 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
15 chr19 HAVANA CDS 9000442 9000566 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
17 chr19 HAVANA CDS 9000147 9000214 . - 0 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
19 chr19 HAVANA CDS 8999392 8999564 . - 1 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
21 chr19 HAVANA CDS 8999025 8999060 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
23 chr19 HAVANA CDS 8998698 8998763 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
25 chr19 HAVANA CDS 8997412 8997536 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000596768…
151 chr19 HAVANA CDS 9006642 9006766 . - 2 gene_id "ENSG00000181143.11"; transcript_id "ENST00000599436…
[all …]
/dports/dns/bind-tools/bind-9.16.27/bin/tests/system/cds/
H A Dsetup.sh50 sed 's/ IN DS / IN CDS /' <DS.$n >>CDS.$n
105 cat sig.null CDS.1 >brk.unsigned-cds
107 cat db.null CDS.1 | sign cds.1
108 cat db.null CDS.2 | sign cds.2
109 cat db.null CDS.1 CDS.2 | sign cds.both
114 cat db.null CDS.2 CDNSKEY.2 | sign cds.cdnskey.2
/dports/dns/bind916/bind-9.16.27/bin/tests/system/cds/
H A Dsetup.sh50 sed 's/ IN DS / IN CDS /' <DS.$n >>CDS.$n
105 cat sig.null CDS.1 >brk.unsigned-cds
107 cat db.null CDS.1 | sign cds.1
108 cat db.null CDS.2 | sign cds.2
109 cat db.null CDS.1 CDS.2 | sign cds.both
114 cat db.null CDS.2 CDNSKEY.2 | sign cds.cdnskey.2
/dports/dns/samba-nsupdate/bind-9.16.5/bin/tests/system/cds/
H A Dsetup.sh48 sed 's/ IN DS / IN CDS /' <DS.$n >>CDS.$n
103 cat sig.null CDS.1 >brk.unsigned-cds
105 cat db.null CDS.1 | sign cds.1
106 cat db.null CDS.2 | sign cds.2
107 cat db.null CDS.1 CDS.2 | sign cds.both
112 cat db.null CDS.2 CDNSKEY.2 | sign cds.cdnskey.2
/dports/biology/bcftools/bcftools-1.14/test/csq/EMN908947/
H A Dribosomal-slippage.gff5 MN908947.3 feature CDS 13463 13468 . + 0 ID=CDS:YP_009724389.1;Parent=transcript:ORF1ab;biotype=pro…
6 MN908947.3 feature CDS 13468 13473 . + 0 ID=CDS:YP_009724389.1;Parent=transcript:ORF1ab;biotype=pro…
/dports/biology/bio-mocha/bcftools-1.14/test/csq/EMN908947/
H A Dribosomal-slippage.gff5 MN908947.3 feature CDS 13463 13468 . + 0 ID=CDS:YP_009724389.1;Parent=transcript:ORF1ab;biotype=pro…
6 MN908947.3 feature CDS 13468 13473 . + 0 ID=CDS:YP_009724389.1;Parent=transcript:ORF1ab;biotype=pro…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/import/unit_test/data/input/
H A Dtest-classified-exons.gtf7 140 Twinscan CDS 66996 66999 . - 1 gene_id "140.000"; transcript_id "140.000.1";
9 140 Twinscan CDS 70207 70294 . - 2 gene_id "140.000"; transcript_id "140.000.1";
10 140 Twinscan CDS 71696 71807 . - 0 gene_id "140.000"; transcript_id "140.000.1";
13 140 Twinscan CDS 73222 73222 . - 0 gene_id "140.000"; transcript_id "140.000.1";

12345678910>>...111