| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/ |
| H A D | CreateSequenceFromTextAndOpenViewTask.cpp | 56 CHECK_EXT(nullptr != openProjectTask, setError(tr("Can't create a project")), ); in prepare()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/hmmer/ |
| H A D | HmmerParseSearchResultsTask.cpp | 76 … CHECK_EXT(tokens.size() >= 23, stateInfo.addWarning(tr("Can't parse line %1").arg(lineNumber)), ); in processHit()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/ |
| H A D | NEXUSFormat.cpp | 446 …CHECK_EXT(sectionRowIndex < names.length(), errors.append("MATRIX sections have different count of… in readDataContents()
447 …CHECK_EXT(name == names[sectionRowIndex], errors.append("MATRIX sections have different name order… in readDataContents()
469 CHECK_EXT(ma->getAlphabet() != nullptr, errors.append("Unknown alphabet"), false); in readDataContents()
479 CHECK_EXT(ma->getAlphabet() != nullptr, errors.append("Unknown alphabet"), false); in readDataContents()
|
| H A D | FastaFormat.cpp | 144 …CHECK_EXT(isHeaderLine(line), os.setError(FastaFormat::tr("First line is not a FASTA header")), ""… in readHeader()
276 …CHECK_EXT(!objects.isEmpty() || mergeIntoSingleSequence, os.setError(Document::tr("Document is emp… in load()
482 CHECK_EXT(!seqData.isEmpty(), os.setError("Invalid fasta input"), result); in getSequencesAndNamesFromUserInput()
|
| H A D | GenbankPlainTextFormat.cpp | 103 … CHECK_EXT(rawData.indexOf(LOCUS) == 0, st->si.setError(tr("LOCUS is not the first line")), false); in readIdLine()
546 CHECK_EXT(ok, os.setError(L10N::errorOpeningFileRead(filePath)), false); in checkCircularity()
647 CHECK_EXT(!qstr.isEmpty(), si.setError(tr("Error writing document")), ); in writeQualifier()
783 … CHECK_EXT(v.canConvert<QStringList>(), coreLog.info("Unexpected Genbank COMMENT section"), res); in processCommentKeys()
811 CHECK_EXT(nullptr != ao, si.setError(tr("Invalid annotation table!")), ); in writeAnnotations()
|
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/variants/src/ |
| H A D | AssemblySamtoolsMpileup.cpp | 135 …CHECK_EXT(nullptr != varObj, taskLog.error(tr("Incorrect variant track object in %1").arg(doc->get… in onSubTaskFinished()
242 CHECK_EXT(started, setError(tr("Can not run %1 tool").arg(toolName)), ); in start()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_orf/ |
| H A D | ORFFinder.cpp | 348 …CHECK_EXT(strand != ORFAlgorithmStrand_Both, os.setError("Invalid strand: direct or complement are… in checkStopCodonOnJunction()
353 …CHECK_EXT(aTT != nullptr, os.setError("Cannot convert DNATranslation to DNATranslation3to1Impl!"),… in checkStopCodonOnJunction()
358 CHECK_EXT(tmp != nullptr, os.setError("Incorrect codon"), ); in checkStopCodonOnJunction()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_msaedit/ |
| H A D | CreateSubalignmentTask.cpp | 103 …CHECK_EXT(origDoc->isStateLocked(), setError(tr("Document is locked: %1").arg(origDoc->getURLStrin… in prepare()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/ |
| H A D | DiamondBuildWorker.cpp | 113 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), os.setError(tr("Taxonomy cla… in getSettings()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/udr/ |
| H A D | UdrDbiUnitTests.cpp | 109 CHECK_EXT(srcData.size() == iStream->available(), os.setError("wrong stream size"), ); in checkWrittenDataSchema2()
113 CHECK_EXT(read == dstData.size(), os.setError("wrong read size"), ); in checkWrittenDataSchema2()
114 CHECK_EXT(srcData == dstData, os.setError("wrong data"), ); in checkWrittenDataSchema2()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/tasks/ |
| H A D | SequenceQualityTrimTask.cpp | 123 …CHECK_EXT(sequence.hasQualityScores(), stateInfo.addWarning(tr("The trimming was skipped for the s… in trimSequence()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/GUITestBase/src/runnables/ugene/plugins/pcr/ |
| H A D | ImportPrimersDialogFiller.cpp | 52 CHECK_EXT(!fileList.isEmpty(), GTUtilsDialog::clickButtonBox(os, QDialogButtonBox::Cancel), ); in commonScenario()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
| H A D | CmdlineTaskRunner.cpp | 140 CHECK_EXT(Process32First(hProcessSnap, &pe32), CloseHandle(hProcessSnap), children); in getChildrenProcesses()
271 … CHECK_EXT(startedSuccessfully, setError(tr("Cannot start process '%1'").arg(cmdlineUgenePath)), ); in prepare()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/ |
| H A D | MaEditorTasks.cpp | 297 CHECK_EXT(!filteredConsensus.isEmpty(), setError("Consensus is empty!"), nullptr); in createDocument()
304 CHECK_EXT(df, setError("Document format is NULL!"), nullptr); in createDocument()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/seqpos/ |
| H A D | SeqPosTask.cpp | 106 CHECK_EXT(nullptr != bedFormat, stateInfo.setError("NULL bed format"), doc); in createDoc()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/wevote_support/src/ |
| H A D | WevoteWorker.cpp | 118 …CHECK_EXT(!settings.inputFileUrl.isEmpty(), os.setError(tr("Empty input file URL in the message"))… in getSettings()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_msa_distance/ |
| H A D | MSADistanceAlgorithm.cpp | 63 …CHECK_EXT(memoryAcquired, setError(QString("There is not enough memory to calculating distances ma… in MSADistanceAlgorithm()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/ |
| H A D | GenomeAlignerFindTask.h | 45 #define CHECK_LOG(a, b) CHECK_EXT(a, algoLog.trace("Check failed " #a), b)
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/utils/ |
| H A D | ExternalToolValidateTask.cpp | 64 … CHECK_EXT(toolPathInfo.exists(), setError(tr("External tool is not found: %1").arg(toolPath)), ); in ExternalToolJustValidateTask()
93 …CHECK_EXT(nullptr != stool, setError(tr("Scripting tool '%1' isn't found in the registry").arg(ori… in run()
|
| H A D | ExternalToolSearchTask.cpp | 49 CHECK_EXT(tool, setError(tr("External tool '%1' is not registered").arg(toolId)), ); in run()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/ |
| H A D | FormatDBSupportTask.cpp | 148 CHECK_EXT(!tmpDir.isEmpty(), setError(tr("Cannot create temp folder")), ""); in prepareTempDir()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/features/ |
| H A D | FeatureDbiUnitTests.cpp | 114 CHECK_EXT(feature.hasValidId(), os.setError("Invalid feature ID!"), INVALID_FEATURE); in createTestFeature1()
131 CHECK_EXT(feature.hasValidId(), os.setError("Invalid feature ID!"), INVALID_FEATURE); in createTestFeature2()
148 CHECK_EXT(feature.hasValidId(), os.setError("Invalid feature ID!"), INVALID_FEATURE); in createTestFeature3()
163 CHECK_EXT(feature.hasValidId(), os.setError("Invalid feature ID!"), INVALID_FEATURE); in createTestFeatureWithoutKeys()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bedtools/ |
| H A D | BedToolsWorkersLibrary.cpp | 816 CHECK_EXT(!objList.isEmpty(), output->setEnded(), ); in sl_taskFinished()
820 CHECK_EXT(obj != nullptr, output->setEnded(), ); in sl_taskFinished()
859 …CHECK_EXT(data.contains(portId), os.setError(tr("Data not found by %1 id").arg(portId)), U2EntityR… in getAnnotationsEntityRef()
863 … CHECK_EXT(obj != nullptr, os.setError(tr("Can not get annotation table object")), U2EntityRef()); in getAnnotationsEntityRef()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | BaseDocWriter.cpp | 111 CHECK_EXT(dstDbiRef.isValid(), os.setError(tr("Invalid database reference")), ); in takeParameters()
114 CHECK_EXT(!dstPathInDb.isEmpty(), os.setError(tr("Empty destination path supplied")), ); in takeParameters()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
| H A D | MysqlSequenceDbi.cpp | 383 …CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during reverting replacing sequence dat… in undoUpdateSequenceData()
398 CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during replacing sequence data")), ); in redoUpdateSequenceData()
|