| /dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/ |
| H A D | KrakenBuildTask.cpp | 112 …CHECK_EXT(settings.mode != KrakenBuildTaskSettings::SHRINK || !settings.inputDatabaseUrl.isEmpty()… in checkSettings()
113 …CHECK_EXT(settings.mode != KrakenBuildTaskSettings::SHRINK || QFileInfo(settings.inputDatabaseUrl)… in checkSettings()
114 CHECK_EXT(!settings.newDatabaseUrl.isEmpty(), setError(tr("New database URL is empty")), ); in checkSettings()
115 …CHECK_EXT(settings.mode != KrakenBuildTaskSettings::BUILD || !settings.additionalGenomesUrls.isEmp… in checkSettings()
128 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Taxonomy data a… in checkTaxonomy()
143 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Cannot find tax… in prepareTaxonomyData()
149 …CHECK_EXT(succeed, setError(tr("Can't create a symbolic link to the taxonomy file: %1").arg(source… in prepareTaxonomyData()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
| H A D | CopyDocumentTask.cpp | 60 …CHECK_EXT(iof != nullptr, stateInfo.setError(QString("Can not create IO factory for %1").arg(dstUr… in prepare()
63 …CHECK_EXT(df != nullptr, stateInfo.setError(QString("Unknown document format IO factory: %1").arg(… in prepare()
113 CHECK_EXT(nullptr != srcDoc, stateInfo.setError("NULL source document"), ); in CloneObjectsTask()
114 CHECK_EXT(nullptr != dstDoc, stateInfo.setError("NULL destination document"), ); in CloneObjectsTask()
119 CHECK_EXT(nullptr != df, stateInfo.setError("NULL document format"), ); in run()
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| H A D | DeleteObjectsTask.cpp | 68 CHECK_EXT(nullptr != obj, stateInfo.setError("Invalid object detected!"), ); in DeleteObjectsTask()
100 CHECK_EXT(nullptr != doc, stateInfo.setError("Invalid document detected!"), ); in DeleteFoldersTask()
102 CHECK_EXT(dbiRef.isValid(), stateInfo.setError("Invalid DBI reference detected!"), ); in DeleteFoldersTask()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/ |
| H A D | MegaFormat.cpp | 67 CHECK_EXT(d != nullptr, os.setError(L10N::badArgument("doc")), ); in storeDocument()
68 CHECK_EXT(io != nullptr && io->isOpen(), os.setError(L10N::badArgument("IO adapter")), ); in storeDocument()
81 CHECK_EXT(!os.isCoR(), os.setError(L10N::errorWritingFile(d->getURL())), ); in storeDocument()
107 CHECK_EXT(!io->hasError(), ti.setError(io->errorString()), false); in getNextLine()
324 CHECK_EXT(al->getAlphabet() != nullptr, os.setError(tr("Alphabet is unknown")), ); in load()
395 CHECK_EXT(!line.isEmpty(), ti.setError(MegaFormat::tr("No header")), ); in readHeader()
402 CHECK_EXT(!line.isEmpty(), ti.setError(MegaFormat::tr("No header")), ); in readHeader()
426 CHECK_EXT(!line.isEmpty(), ti.setError(MegaFormat::tr("No data in file")), ); in readTitle()
435 CHECK_EXT(!line.isEmpty(), ti.setError(MegaFormat::tr("No data in file")), ); in readTitle()
441 CHECK_EXT(word == MEGA_TITLE, ti.setError(MegaFormat::tr("Incorrect title")), ); in readTitle()
[all …]
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| H A D | EMBLGenbankAbstractDocument.cpp | 163 CHECK_EXT(!st.io->hasError(), os.setError(st.io->errorString()), ); in load()
167 CHECK_EXT(!st.io->hasError(), os.setError(st.io->errorString()), ); in load()
325 CHECK_EXT(!st.io->hasError(), os.setError(st.io->errorString()), nullptr); in loadTextSequence()
329 CHECK_EXT(!st.io->hasError(), os.setError(st.io->errorString()), nullptr); in loadTextSequence()
426 CHECK_EXT(!io->hasError(), os.setError(io->errorString()), -1); in readMultilineQualifier()
444 CHECK_EXT(!io->hasError(), os.setError(io->errorString()), -1); in readMultilineQualifier()
451 CHECK_EXT(!io->hasError(), os.setError(io->errorString()), -1); in readMultilineQualifier()
693 CHECK_EXT(!io->hasError(), os.setError(io->errorString()), false); in readSequence()
757 CHECK_EXT(!io->hasError(), si.setError(io->errorString()), ); in skipInvalidAnnotation()
771 CHECK_EXT(!io->hasError(), si.setError(io->errorString()), ); in skipInvalidAnnotation()
[all …]
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| /dports/biology/ugene/ugene-40.1/src/plugins/CoreTests/src/ |
| H A D | UtilTestActions.cpp | 94 CHECK_EXT(!url.isEmpty(), failMissingValue(URL_ATTR), ); in init()
100 …CHECK_EXT(conversionOk, stateInfo.setError(QString("Cannot convert %1 to an integer value of port … in init()
103 CHECK_EXT(!dbName.isEmpty(), failMissingValue(DB_NAME_ATTR), ); in init()
114 …CHECK_EXT(nullptr != settings, stateInfo.setError("Invalid application settings"), ReportResult_Fi… in report()
120 …CHECK_EXT(nullptr != passStorage, stateInfo.setError("Invalid shared DB passwords storage"), Repor… in report()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/shared_db/ |
| H A D | ImportFileToDatabaseTask.cpp | 48 CHECK_EXT(QFileInfo(srcUrl).isFile(), setError(tr("It is not a file: ") + srcUrl), ); in ImportFileToDatabaseTask()
49 CHECK_EXT(dstDbiRef.isValid(), setError(tr("Invalid database reference")), ); in ImportFileToDatabaseTask()
54 …CHECK_EXT(format != nullptr || importTask != nullptr, setError(tr("File format is not recognized")… in prepare()
70 CHECK_EXT(ioFactory != nullptr, setError(tr("Unrecognized url: ") + srcUrl), ); in run()
97 CHECK_EXT(!formats.isEmpty(), setError(tr("File format is not recognized")), nullptr); in detectFormat()
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| H A D | ImportObjectToDatabaseTask.cpp | 39 CHECK_EXT(nullptr != object, setError(tr("Invalid object to import")), ); in ImportObjectToDatabaseTask()
40 CHECK_EXT(dstDbiRef.isValid(), setError(tr("Invalid database reference")), ); in ImportObjectToDatabaseTask()
54 CHECK_EXT(!object.isNull(), setError(tr("The object has been removed")), ); in run()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/datatype/ |
| H A D | UdrSchemaRegistry.cpp | 41 CHECK_EXT(nullptr != schema, os.setError("NULL schema"), ); in registerSchema()
42 CHECK_EXT(isCorrectName(schema->getId()), os.setError("Incorrect schema id"), ); in registerSchema()
43 CHECK_EXT(!schemas.contains(schema->getId()), os.setError("Duplicate schema id"), ); in registerSchema()
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| H A D | DNASequenceUtils.cpp | 66 CHECK_EXT(newChars.length() > 0, os.setError("Array of chars for replacing is empty!"), ); in insertChars()
82 CHECK_EXT(newChars.length() > 0, os.setError("Array of chars for replacing is empty!"), ); in replaceChars()
154 …CHECK_EXT(sequenceLength <= sequence.quality.qualCodes.length(), crop(sequence, 0, 0), U2Region()); in trimByQuality()
173 CHECK_EXT(isRegionAcceptable, crop(sequence, 0, 0), U2Region()); in trimByQuality()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/globals/ |
| H A D | UserActionsWriter.cpp | 65 … CHECK_EXT(m, userActLog.error(QString("MouseEvent is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ); in generateMouseMessage()
74 …CHECK_EXT(mainWindow, userActLog.error(QString("Main window is NULL %1:%2").arg(__FILE__).arg(__LI… in generateMouseMessage()
115 …CHECK_EXT(m, userActLog.error(QString("MouseEvent is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""… in getMouseButtonInfo()
132 …CHECK_EXT(m, userActLog.error(QString("MouseEvent is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""… in getTreeWidgetInfo()
133 …CHECK_EXT(parent, userActLog.error(QString("Widget is NULL %1:%2").arg(__FILE__).arg(__LINE__)), "… in getTreeWidgetInfo()
156 …CHECK_EXT(m, userActLog.error(QString("MouseEvent is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""… in getAdditionalWidgetInfo()
157 CHECK_EXT(w, userActLog.error(QString("Widget is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""); in getAdditionalWidgetInfo()
179 …CHECK_EXT(m, userActLog.error(QString("MouseEvent is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""… in getWidgetText()
180 CHECK_EXT(w, userActLog.error(QString("Widget is NULL %1:%2").arg(__FILE__).arg(__LINE__)), ""); in getWidgetText()
219 …CHECK_EXT(nullptr != k, userActLog.error(QString("key event is NULL %1:%2").arg(__FILE__).arg(__LI… in generateKeyMessage()
[all …]
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| /dports/biology/ugene/ugene-40.1/src/plugins/metaphlan2_support/src/ |
| H A D | Metaphlan2Task.cpp | 134 …CHECK_EXT(!pklFiles.isEmpty(), stateInfo.setError(tr(".pkl file is absent in the database folder."… in getArguments()
135 …CHECK_EXT(pklFiles.size() == 1, stateInfo.setError(tr("There is 1 .pkl file in the database folder… in getArguments()
158 CHECK_EXT(formatId == pairedFormatId, in detectInputFormats()
169 CHECK_EXT(detection == DocumentUtils::FORMAT, in detectFormat()
173 …CHECK_EXT(resultFormatId == BaseDocumentFormats::FASTA || resultFormatId == BaseDocumentFormats::F… in detectFormat()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Private/src/ |
| H A D | ServiceRegistryImpl.cpp | 152 … CHECK_EXT(!sr->services.contains(s), stateInfo.setError(tr("Service has already registered")), ); in prepare()
153 …CHECK_EXT(s->getState() == ServiceState_Disabled_New, stateInfo.setError(tr("Illegal service state… in prepare()
214 CHECK_EXT(s->isDisabled(), stateInfo.setError(tr("Service is enabled")), ); in prepare()
215 CHECK_EXT(sr->services.contains(s), stateInfo.setError(tr("Service is not registered")), ); in prepare()
255 CHECK_EXT(sr->services.contains(s), stateInfo.setError(tr("Service is not registered")), ); in prepare()
288 CHECK_EXT(sr->services.contains(s), stateInfo.setError(tr("Service is not registered")), ); in prepare()
289 CHECK_EXT(s->isEnabled(), stateInfo.setError(tr("Service is not enabled")), ); in prepare()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/imageExport/ |
| H A D | WidgetScreenshotExportTask.cpp | 52 CHECK_EXT(result, setError(tr("Painter is still active")), ); in run()
58 CHECK_EXT(ok, setError(tr("Can not open the file: %1").arg(file.fileName())), ); in run()
61 CHECK_EXT(ok, setError(tr("Can not open the file: %1").arg(file.fileName())), ); in run()
77 CHECK_EXT(ok, setError(EXPORT_FAIL_MESSAGE.arg(settings.fileName)), ); in run()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/align_worker_subtasks/ |
| H A D | FormatDBSubTask.cpp | 58 CHECK_EXT(!refObject.isNull(), setError(L10N::nullPointerError("U2SequenceObject")), ); in prepare()
60 … CHECK_EXT(refObject->getAlphabet() != nullptr, setError(L10N::nullPointerError("DNAAlphabet")), ); in prepare()
65 …CHECK_EXT(!tempDirPath.isEmpty(), setError(tr("The task uses a temporary folder to process the dat… in prepare()
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| H A D | ComposeResultSubTask.cpp | 48 CHECK_EXT(!object.isNull(), os.setError(L10N::nullPointerError("Sequence object")), 0); in calcMemUsageBytes()
95 …CHECK_EXT(nullptr != referenceSequenceObject, setError(L10N::nullPointerError("reference sequence … in run()
287 …CHECK_EXT(readNum < subTasks.size(), setError(L10N::internalError("Wrong reads number")), nullptr); in getBlastSwTask()
296 … CHECK_EXT(!readObject.isNull(), setError(L10N::nullPointerError("Read sequence")), DNASequence()); in getReadSequence()
307 …CHECK_EXT(!readObject.isNull(), setError(L10N::nullPointerError("Read sequence")), DNAChromatogram… in getReadChromatogram()
311 …CHECK_EXT(chromatogramRef.isValid(), setError(tr("The related chromatogram not found")), DNAChroma… in getReadChromatogram()
351 …CHECK_EXT(referenceSequenceObject != nullptr, setError(L10N::nullPointerError("Reference sequence"… in insertShiftedGapsIntoReference()
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| /dports/biology/ugene/ugene-40.1/src/plugins/pcr/src/ |
| H A D | PrimerStatistics.cpp | 232 … CHECK_EXT(value >= GC_BOTTOM, error = getMessage(PrimerStatistics::tr("low GC-content")), false); in isValidGC()
233 CHECK_EXT(value <= GC_TOP, error = getMessage(PrimerStatistics::tr("high GC-content")), false); in isValidGC()
239 …CHECK_EXT(value >= TM_BOTTOM, error = getMessage(PrimerStatistics::tr("low melting temperature")),… in isValidTm()
240 …CHECK_EXT(value <= TM_TOP, error = getMessage(PrimerStatistics::tr("high melting temperature")), f… in isValidTm()
246 … CHECK_EXT(value >= CLAMP_BOTTOM, error = getMessage(PrimerStatistics::tr("low GC clamp")), false); in isValidGCClamp()
252 …CHECK_EXT(value <= RUNS_TOP, error = getMessage(PrimerStatistics::tr("high base runs value")), fal… in isValidRuns()
268 …CHECK_EXT(!dimersInfo.canBeFormed, error = "<br>Self-dimer can be formed:<br>" + dimersInfo.getSho… in isSelfDimer()
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| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/ |
| H A D | SampleActionsManager.cpp | 63 CHECK_EXT(nullptr != a, os.setError(L10N::internalError("Unexpected method call")), -1); in getValidClickedActionId()
67 CHECK_EXT(ok, os.setError(L10N::internalError("Wrong action ID")), -1); in getValidClickedActionId()
69 …CHECK_EXT(id >= 0 && id < actions.size(), os.setError(L10N::internalError("Out of range action ID"… in getValidClickedActionId()
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| /dports/biology/ugene/ugene-40.1/src/plugins/repeat_finder/src/ |
| H A D | RFBase.cpp | 103 CHECK_EXT(nullptr != resultsListener, cancel(), ); in addToResults()
107 CHECK_EXT(nullptr != resultsListener, cancel(), ); in addToResults()
117 CHECK_EXT(nullptr != resultsListener, cancel(), ); in addToResults()
134 CHECK_EXT(nullptr != resultsListener, cancel(), ); in addToResults()
146 CHECK_EXT(nullptr != resultsListener, cancel(), ); in prepare()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Test/src/xmltest/ |
| H A D | XMLTestUtils.cpp | 42 CHECK_EXT(element.hasAttribute(attribute), failMissingValue(attribute), ); in checkNecessaryAttributeExistence()
51 …CHECK_EXT(!element.hasAttribute(attribute) || acceptableValues.contains(element.attribute(attribut… in checkAttribute()
67 CHECK_EXT(success, wrongValue(attribute), 0); in getInt()
77 CHECK_EXT(success, wrongValue(attribute), 0); in getInt64()
87 CHECK_EXT(success, wrongValue(attribute), 0); in getDouble()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/move_to_object/ |
| H A D | MoveToObjectMaController.cpp | 94 …CHECK_EXT(referenceObject != nullptr, QMessageBox::critical(ui, L10N::errorTitle(), L10N::errorObj… in buildMoveSelectionToAnotherObjectMenu()
95 …CHECK_EXT(!referenceObject->isStateLocked(), QMessageBox::critical(ui, L10N::errorTitle(), L10N::e… in buildMoveSelectionToAnotherObjectMenu()
98 …CHECK_EXT(targetMsaObject != nullptr, QMessageBox::critical(ui, L10N::errorTitle(), L10N::nullPoin… in buildMoveSelectionToAnotherObjectMenu()
103 …CHECK_EXT(!rowIdsToRemove.isEmpty(), QMessageBox::critical(ui, L10N::errorTitle(), L10N::internalE… in buildMoveSelectionToAnotherObjectMenu()
196 …CHECK_EXT(rowIds.size() < maObject->getNumRows(), setError(tr("Can't remove all rows from the alig… in run()
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/external_script/base_scheme_interface/ |
| H A D | SchemeSimilarityUtils.cpp | 49 CHECK_EXT(properSchemeContent.contains(statement), in checkSchemesSimilarity()
56 CHECK_EXT(properSchemeStatements.isEmpty(), stateInfo.setError("Too few definitions" in checkSchemesSimilarity()
79 …CHECK_EXT(U2_OK == error, stateInfo.setError(QString::fromWCharArray(getErrorString(error))), QStr… in getSchemeContentByHandle()
86 CHECK_EXT(schemeContent.startsWith(Constants::HEADER_LINE), in getSchemeContentByHandle()
100 CHECK_EXT((file.isOpen() || file.open(QIODevice::ReadOnly | QIODevice::Text)), in readFileContent()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
| H A D | MysqlUdrDbi.cpp | 60 CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during updating UDR")), ); in undo()
73 CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during updating UDR")), ); in redo()
82 CHECK_EXT(data.size() == schema->size(), os.setError("Size mismatch"), result); in addRecord()
99 CHECK_EXT(data.size() == schema->size(), os.setError("Size mismatch"), ); in updateRecord()
125 CHECK_EXT(ok, os.setError("Unknown record id"), result); in getRecord()
211 CHECK_EXT(size >= 0, os.setError("Negative stream size"), nullptr); in createOutputStream()
212 CHECK_EXT(size <= INT_MAX, os.setError("Too big stream size"), nullptr); in createOutputStream()
247 CHECK_EXT(nullptr != schema, os.setError("NULL schema"), ); in initSchema()
258 CHECK_EXT(schema->size() > 0, os.setError("Empty schema"), ); in createTable()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
| H A D | SQLiteUdrDbi.cpp | 54 CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during updating UDR")), ); in undo()
65 CHECK_EXT(ok, os.setError(U2DbiL10n::tr("An error occurred during updating UDR")), ); in redo()
74 CHECK_EXT(data.size() == schema->size(), os.setError("Size mismatch"), result); in addRecord()
89 CHECK_EXT(data.size() == schema->size(), os.setError("Size mismatch"), ); in updateRecord()
113 CHECK_EXT(ok, os.setError("Unknown record id"), result); in getRecord()
194 CHECK_EXT(size >= 0, os.setError("Negative stream size"), nullptr); in createOutputStream()
195 CHECK_EXT(size <= INT_MAX, os.setError("Too big stream size"), nullptr); in createOutputStream()
222 CHECK_EXT(nullptr != schema, os.setError("NULL schema"), ); in initSchema()
233 CHECK_EXT(schema->size() > 0, os.setError("Empty schema"), ); in createTable()
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| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | CmdlineBasedWorkerValidator.cpp | 39 CHECK_EXT(QFile(config->customToolPath).exists(), in validate()
42 CHECK_EXT(QFileInfo(config->customToolPath).isFile(), in validate()
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