adeno (reference) in projects: dports - OpenGrok search results

Project(s)

Full Search
Definition
Symbol
File Path
History
Type

Searched refs:adeno (Results 226 – 250 of 443) sorted by relevance

1 2 3 4 5 6 7 8 910>>...18

/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/tests/
H A D	generate_outputs.sh	15 …${RAZERS} adeno-genome.fa adeno-reads${rl}_1.fa -o se-adeno-reads${rl}_1.razers > se-adeno-reads${… 18 …${RAZERS} -id adeno-genome.fa adeno-reads${rl}_1.fa -o se-adeno-reads${rl}_1-id.razers > se-adeno-… 21 …${RAZERS} -f -id adeno-genome.fa adeno-reads${rl}_1.fa -o se-adeno-reads${rl}_1-id-f.razers > se-a… 22 …${RAZERS} -r -id adeno-genome.fa adeno-reads${rl}_1.fa -o se-adeno-reads${rl}_1-id-r.razers > se-a… 48 …${RAZERS} adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads${rl}_2.raz… 51 …${RAZERS} -id adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads${rl}_2… 54 …${RAZERS} -f -id adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads${rl… 55 …${RAZERS} -r -id adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads${rl… 59 …{RAZERS} -i ${i} -id adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads… 66 …${RAZERS} -id adeno-genome.fa adeno-reads${rl}_1.fa adeno-reads${rl}_2.fa -o pe-adeno-reads${rl}_2… [all …]
H A D	se-adeno-reads36_1-id-of3.gff	1 gi\|9632547\|ref\|NC_002077.1\| razers read 4 39 100 + . ID=adeno-reads36.fasta.000000743;multi 2 gi\|9632547\|ref\|NC_002077.1\| razers read 5 40 100 + . ID=adeno-reads36.fasta.000000619;multi 5 gi\|9632547\|ref\|NC_002077.1\| razers read 31 66 100 - . ID=adeno-reads36.fasta.000000893;multi 6 gi\|9632547\|ref\|NC_002077.1\| razers read 32 67 100 + . ID=adeno-reads36.fasta.000000286;multi 7 gi\|9632547\|ref\|NC_002077.1\| razers read 38 73 100 + . ID=adeno-reads36.fasta.000000718;multi 8 gi\|9632547\|ref\|NC_002077.1\| razers read 39 74 100 - . ID=adeno-reads36.fasta.000000171;multi 9 gi\|9632547\|ref\|NC_002077.1\| razers read 46 81 100 + . ID=adeno-reads36.fasta.000000488;multi 10 gi\|9632547\|ref\|NC_002077.1\| razers read 60 95 100 + . ID=adeno-reads36.fasta.000000426;multi 11 gi\|9632547\|ref\|NC_002077.1\| razers read 74 109 100 + . ID=adeno-reads36.fasta.000000004;multi 12 gi\|9632547\|ref\|NC_002077.1\| razers read 74 109 100 + . ID=adeno-reads36.fasta.000000566;multi [all …]
H A D	pe-adeno-reads100_2-id-i99.razers	1 adeno-reads100.fasta.000000010/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 4448 4548 100 17 0 -253 2 adeno-reads100.fasta.000000010/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 4295 4395 100 17 0 253 3 adeno-reads100.fasta.000000082/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1397 1497 100 7 -1 261 4 adeno-reads100.fasta.000000082/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1558 1658 99 7 -1 -261 5 adeno-reads100.fasta.000000119/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 3446 3546 100 22 0 -249 6 adeno-reads100.fasta.000000119/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3297 3397 100 22 0 249 7 adeno-reads100.fasta.000000120/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 2479 2579 99 10 -2 265 8 adeno-reads100.fasta.000000120/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 2644 2744 99 10 -2 -265 9 adeno-reads100.fasta.000000235/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1694 1793 99 8 -2 260 10 adeno-reads100.fasta.000000235/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1854 1954 99 8 -2 -260 [all …]
H A D	pe-adeno-reads36_2-id-r.razers	1 adeno-reads36.fasta.000000046/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2907 2943 100 14 -1 -268 2 adeno-reads36.fasta.000000046/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2907 2943 100 15 -1 -268 3 adeno-reads36.fasta.000000046/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2675 2711 97.222 14 -1 268 4 adeno-reads36.fasta.000000046/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2675 2711 97.222 15 -1 268 5 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 16 0 -266 6 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 16 0 266 7 adeno-reads36.fasta.000000171/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4631 4667 100 1 0 -263 8 adeno-reads36.fasta.000000171/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4631 4667 100 2 0 -263 9 adeno-reads36.fasta.000000171/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4404 4440 100 1 0 263 10 adeno-reads36.fasta.000000171/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4404 4440 100 2 0 263 [all …]
H A D	pe-adeno-reads100_2-id-r.razers	1 adeno-reads100.fasta.000000010/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 4448 4548 100 1 0 -253 2 adeno-reads100.fasta.000000010/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 4295 4395 100 1 0 253 3 adeno-reads100.fasta.000000119/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 3446 3546 100 16 0 -249 4 adeno-reads100.fasta.000000119/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 3446 3546 100 17 0 -249 5 adeno-reads100.fasta.000000119/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3297 3397 100 16 0 249 6 adeno-reads100.fasta.000000119/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3297 3397 100 17 0 249 7 adeno-reads100.fasta.000000137/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 4093 4193 100 12 -4 -269 8 adeno-reads100.fasta.000000137/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3924 4023 96 12 -4 269 10 adeno-reads100.fasta.000000260/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3268 3368 99 18 -1 270 12 adeno-reads100.fasta.000000291/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3943 4044 99 10 -2 270 [all …]
H A D	pe-adeno-reads36_2-id-i100.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 16 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 16 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 10 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 10 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 7 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 7 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 26 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 26 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 2 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 2 0 -267 [all …]
H A D	pe-adeno-reads36_2-id-i98.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 16 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 16 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 10 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 10 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 7 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 7 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 26 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 26 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 2 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 2 0 -267 [all …]
H A D	pe-adeno-reads36_2-id-i99.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 16 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 16 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 10 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 10 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 7 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 7 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 26 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 26 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 2 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 2 0 -267 [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/micro_razers/tests/
H A D	se-adeno-reads36_1_sl14.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl15.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl16.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl17.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl18.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl19.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
H A D	se-adeno-reads36_1_sl20.sam	1 adeno-reads36.fasta.000000000 0 gi\|9632547\|ref\|NC_002077.1\| 3098 255 36M * 0 0 TTCACCACGTGACTGGCAGC… 2 adeno-reads36.fasta.000000001 0 gi\|9632547\|ref\|NC_002077.1\| 416 255 26M10S * 0 0 AGCTGGGTGGCCGAGAAG… 3 adeno-reads36.fasta.000000002 0 gi\|9632547\|ref\|NC_002077.1\| 2695 255 36M * 0 0 GCATCGGCAAGACAGGCCAG… 4 adeno-reads36.fasta.000000003 0 gi\|9632547\|ref\|NC_002077.1\| 823 255 36M * 0 0 CGAGCTGCAGTGGGCGTGGAC… 5 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 74 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAGCG… 6 adeno-reads36.fasta.000000004 0 gi\|9632547\|ref\|NC_002077.1\| 4667 0 36M * 0 0 CTGCTCTGCCGGCCCCACCGAG… 7 adeno-reads36.fasta.000000006 0 gi\|9632547\|ref\|NC_002077.1\| 3901 255 36M * 0 0 TTACAGACGAAGAGGAAATT… 8 adeno-reads36.fasta.000000007 0 gi\|9632547\|ref\|NC_002077.1\| 127 255 36M * 0 0 TCCATCACTAGGGGTAATCGC… 9 adeno-reads36.fasta.000000008 0 gi\|9632547\|ref\|NC_002077.1\| 868 255 22M14S * 0 0 CTGTTTGAACCTGGCCGA… 10 adeno-reads36.fasta.000000009 16 gi\|9632547\|ref\|NC_002077.1\| 3957 255 36M * 0 0 ACCGTGGCAGTCAATTTCC… [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/tests/
H A D	pe-adeno-reads100_2-i99-tc0.razers	1 adeno-reads100.fasta.000000010/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 4448 4548 100 16 0 -253 2 adeno-reads100.fasta.000000010/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 4295 4395 100 16 0 253 3 adeno-reads100.fasta.000000082/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1397 1497 100 6 -1 261 4 adeno-reads100.fasta.000000082/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1558 1658 99 6 -1 -261 5 adeno-reads100.fasta.000000119/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 3446 3546 100 21 0 -249 6 adeno-reads100.fasta.000000119/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3297 3397 100 21 0 249 7 adeno-reads100.fasta.000000120/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 2479 2579 99 9 -2 265 8 adeno-reads100.fasta.000000120/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 2644 2744 99 9 -2 -265 9 adeno-reads100.fasta.000000235/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1694 1793 99 7 -2 260 10 adeno-reads100.fasta.000000235/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1854 1954 99 7 -2 -260 [all …]
H A D	pe-adeno-reads100_2-i99-tc1.razers	1 adeno-reads100.fasta.000000010/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 4448 4548 100 24 0 -253 2 adeno-reads100.fasta.000000010/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 4295 4395 100 24 0 253 3 adeno-reads100.fasta.000000082/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1397 1497 100 6 -1 261 4 adeno-reads100.fasta.000000082/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1558 1658 99 6 -1 -261 5 adeno-reads100.fasta.000000119/L 0 100 R gi\|9632547\|ref\|NC_002077.1\| 3446 3546 100 17 0 -249 6 adeno-reads100.fasta.000000119/R 0 100 F gi\|9632547\|ref\|NC_002077.1\| 3297 3397 100 17 0 249 7 adeno-reads100.fasta.000000120/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 2479 2579 99 14 -2 265 8 adeno-reads100.fasta.000000120/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 2644 2744 99 14 -2 -265 9 adeno-reads100.fasta.000000235/L 0 100 F gi\|9632547\|ref\|NC_002077.1\| 1694 1793 99 2 -2 260 10 adeno-reads100.fasta.000000235/R 0 100 R gi\|9632547\|ref\|NC_002077.1\| 1854 1954 99 2 -2 -260 [all …]
H A D	pe-adeno-reads36_2-i100-tc0.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 15 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 15 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 9 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 9 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 6 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 6 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 25 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 25 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 1 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 1 0 -267 [all …]
H A D	pe-adeno-reads36_2-i100-tc1.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 9 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 9 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 5 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 5 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 10 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 10 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 28 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 28 0 266 10 adeno-reads36.fasta.000000171/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4404 4440 100 17 0 263 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 12 0 267 [all …]
H A D	pe-adeno-reads36_2-i98-tc0.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 15 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 15 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 9 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 9 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 6 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 6 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 25 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 25 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 1 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 1 0 -267 [all …]
H A D	pe-adeno-reads36_2-i98-tc1.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 9 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 9 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 5 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 5 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 10 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 10 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 28 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 28 0 266 10 adeno-reads36.fasta.000000171/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4404 4440 100 17 0 263 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 12 0 267 [all …]
H A D	pe-adeno-reads36_2-i99-tc0.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 15 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 15 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 9 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 9 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 6 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 6 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 25 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 25 0 266 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 1 0 267 14 adeno-reads36.fasta.000000260/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 457 493 100 1 0 -267 [all …]
H A D	pe-adeno-reads36_2-i99-tc1.razers	1 adeno-reads36.fasta.000000018/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4088 4124 100 9 0 266 2 adeno-reads36.fasta.000000018/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 4318 4354 100 9 0 -266 3 adeno-reads36.fasta.000000026/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2484 2520 100 5 0 270 4 adeno-reads36.fasta.000000026/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2718 2754 100 5 0 -270 5 adeno-reads36.fasta.000000049/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 1183 1219 100 10 0 269 6 adeno-reads36.fasta.000000049/R 0 36 R gi\|9632547\|ref\|NC_002077.1\| 1416 1452 100 10 0 -269 7 adeno-reads36.fasta.000000077/L 0 36 R gi\|9632547\|ref\|NC_002077.1\| 2877 2913 100 28 0 -266 8 adeno-reads36.fasta.000000077/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 2647 2683 100 28 0 266 10 adeno-reads36.fasta.000000171/R 0 36 F gi\|9632547\|ref\|NC_002077.1\| 4404 4440 100 17 0 263 13 adeno-reads36.fasta.000000260/L 0 36 F gi\|9632547\|ref\|NC_002077.1\| 226 262 100 12 0 267 [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/rabema/tests/
H A D	generate_outputs.sh	29 ${RABEMA_PREPARE} -i gold-adeno-hamming-08.sam -o gold-adeno-hamming-08.by_qname.sam 31 samtools sort gold-adeno-hamming-08.by_qname.bam gold-adeno-hamming-08.by_coordinate 33 ${RABEMA_PREPARE} -i gold-adeno-edit-08.sam > gold-adeno-edit-08.by_qname.sam 34 samtools view -Sb gold-adeno-edit-08.by_qname.sam -o gold-adeno-edit-08.by_qname.bam 35 samtools sort gold-adeno-edit-08.by_qname.bam gold-adeno-edit-08.by_coordinate 42 …hamming -e 8 -o gold-adeno-hamming-08.gsi --reference adeno-genome.fa --in-bam gold-adeno-hamming-… 43 …c edit -e 8 -o gold-adeno-edit-08.gsi --reference adeno-genome.fa --in-bam gold-adeno-edit-0… 49 …amming -e 8 --reference adeno-genome.fa --in-bam razers2-adeno-hamming-08.sam --in-gsi gold-adeno-… 50 …amming -e 8 --reference adeno-genome.fa --in-bam razers2-adeno-hamming-04.sam --in-gsi gold-adeno-… 51 … edit -e 8 --reference adeno-genome.fa --in-bam razers2-adeno-edit-08.sam --in-gsi gold-aden… [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/sak/tests/
H A D	generate_outputs.sh	`13 echo ${SAK} adeno.fa -o adeno.all.fa 14 ${SAK} adeno.fa -o adeno.all.fa 16 echo ${SAK} adeno.fa -s 1 -o adeno.seq1.fa 17 ${SAK} adeno.fa -s 1 -o adeno.seq1.fa 19 echo ${SAK} adeno.fa -ss 1-2 -o adeno.seq1-2.fa 20 ${SAK} adeno.fa -ss 1-2 -o adeno.seq1-2.fa 22 echo ${SAK} adeno.fa -s 3 -o adeno.seq3.fa 23 ${SAK} adeno.fa -s 3 -o adeno.seq3.fa 26 ${SAK} adeno.fa -sn 'gi\|9626621' -o adeno.sn.fa 34 echo ${SAK} adeno.fa -s 1 -rc -o adeno.s1rc.fa [all …]`

1 2 3 4 5 6 7 8 910>>...18