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H A D2Dfold_8h.tex19 struct \mbox{\hyperlink{group__kl__neighborhood__mfe_structvrna__sol__TwoD__t}{vrna\+\_\+sol\+\_\+\…
20 …d from \mbox{\hyperlink{group__kl__neighborhood__mfe_ga243c288b463147352829df04de6a2f77}{vrna\+\_\…
21 struct \mbox{\hyperlink{group__kl__neighborhood__mfe_structTwoDfold__vars}{Two\+Dfold\+\_\+vars}}
26 …ef struct \mbox{\hyperlink{group__kl__neighborhood__mfe_structvrna__sol__TwoD__t}{vrna\+\_\+sol\+\…
28 typedef struct \mbox{\hyperlink{group__kl__neighborhood__mfe_structTwoDfold__vars}{Two\+Dfold\+\_\+…
33 …hyperlink{group__kl__neighborhood__mfe_structvrna__sol__TwoD__t}{vrna\+\_\+sol\+\_\+\+Two\+D\+\_\+…
35 …\ast$ \mbox{\hyperlink{group__kl__neighborhood__mfe_ga15a96fc96f4f4c2e01a11b3e17d1ef43}{vrna\+\_\+…
37 …hyperlink{group__kl__neighborhood__mfe_structTwoDfold__vars}{Two\+Dfold\+\_\+vars}} $\ast$ \mbox{\…
39 …d \mbox{\hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy\+\_\+\…
41 …hyperlink{group__kl__neighborhood__mfe_structvrna__sol__TwoD__t}{vrna\+\_\+sol\+\_\+\+Two\+D\+\_\+…
[all …]
H A Dtreedist_8h_source.tex8 \DoxyCodeLine{00009 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{dist__vars_8h}{ViennaRNA/d…
10 …ce_l00018}\mbox{\hyperlink{treedist_8h_a08fe4d5afd385dce593b86eaf010c6e3}{00018}} \mbox{\hyperlink…
13 …hyperlink{treedist_8h_a3b21f1925f7071f46d93431a835217bb}{00028}} \textcolor{keywordtype}{float} …
14 \DoxyCodeLine{00029 \mbox{\hyperlink{structTree}{Tree}} *T2);}
17 …hyperlink{treedist_8h_a21ad4de3ba4055aeef08b28c9ad48894}{00035}} \textcolor{keywordtype}{void} …
20 …hyperlink{treedist_8h_acbc1cb9bce582ea945e4a467c76a57aa}{00043}} \textcolor{keywordtype}{void} …
H A Dmodel_8h.tex19 struct \mbox{\hyperlink{group__model__details_structvrna__md__s}{vrna\+\_\+md\+\_\+s}}
73 typedef struct \mbox{\hyperlink{group__model__details_structvrna__md__s}{vrna\+\_\+md\+\_\+s}} \mbo…
80 void \mbox{\hyperlink{group__model__details_ga36ae40b8c3b82362f5798ad5b047b814}{vrna\+\_\+md\+\_\+u…
82 …hyperlink{group__model__details_ga1f8a10e12a0a1915f2a4eff0b28ea17c}{vrna\+\_\+md\+\_\+t}} $\ast$ \…
189 int \mbox{\hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}}
195 int \mbox{\hyperlink{group__model__details_gabf380d09e4f1ab94fc6af57cf0ad5d32}{no\+GU}}
199 int \mbox{\hyperlink{group__model__details_gaf9202a1a09f5828dc731e2d9a10fa111}{circ}}
201 int \mbox{\hyperlink{group__model__details_ga25f2bdcdf56e813d288845484a13d704}{gquad}}
215 int \mbox{\hyperlink{group__model__details_gac408868ba00671cbc7d1d535105af045}{old\+Ali\+En}}
217 int \mbox{\hyperlink{group__model__details_ga0656afca1d2853f9ee6591172f5638de}{ribo}}
[all …]
H A Dgroup__dp__matrices.tex24 struct \mbox{\hyperlink{group__dp__matrices_structvrna__mx__mfe__s}{vrna\+\_\+mx\+\_\+mfe\+\_\+s}}
26 struct \mbox{\hyperlink{group__dp__matrices_structvrna__mx__pf__s}{vrna\+\_\+mx\+\_\+pf\+\_\+s}}
32 typedef struct \mbox{\hyperlink{group__dp__matrices_structvrna__mx__mfe__s}{vrna\+\_\+mx\+\_\+mfe\+…
35 typedef struct \mbox{\hyperlink{group__dp__matrices_structvrna__mx__pf__s}{vrna\+\_\+mx\+\_\+pf\+\_…
68 unsigned int \mbox{\hyperlink{group__dp__matrices_a1f92a8406fc1fb721dbf9193c34ad826}{length}}
162 {\ttfamily \#include $<$\mbox{\hyperlink{dp__matrices_8h}{Vienna\+RNA/dp\+\_\+matrices.\+h}}$>$}
169 \mbox{\hyperlink{group__dp__matrices_gae5aef35d016475e758f619b7bcb534f9}{vrna\+\_\+mx\+\_\+mfe\+\_\…
178 …hyperlink{group__mfe__window_ga689df235a1915a1ad56e377383c044ce}{vrna\+\_\+mfe\+\_\+window()}}, \m…
214 …hyperlink{group__fold__compound_ga283cf113a37614a75c1388c4ec6d7b2f}{vrna\+\_\+fold\+\_\+compound()…
243 …hyperlink{group__fold__compound_ga283cf113a37614a75c1388c4ec6d7b2f}{vrna\+\_\+fold\+\_\+compound()…
[all …]
H A Dlandscape_2walk_8h_source.tex8 \DoxyCodeLine{00011 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{fold__compound_8h}{ViennaR…
9 \DoxyCodeLine{00012 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{move_8h}{ViennaRNA/landsca…
11 \DoxyCodeLine{\Hypertarget{landscape_2walk_8h_source_l00024}\mbox{\hyperlink{group__paths__walk_ga7…
13 \DoxyCodeLine{\Hypertarget{landscape_2walk_8h_source_l00030}\mbox{\hyperlink{group__paths__walk_ga0…
15 \DoxyCodeLine{\Hypertarget{landscape_2walk_8h_source_l00036}\mbox{\hyperlink{group__paths__walk_ga1…
19 \DoxyCodeLine{00073 \mbox{\hyperlink{group__neighbors_structvrna__move__s}{vrna\_move\_t}} *}
20 …hyperlink{group__paths__walk_gaef7afadc36933b80706de49fe36e7b94}{00074}} \mbox{\hyperlink{group__p…
26 \DoxyCodeLine{00101 \mbox{\hyperlink{group__neighbors_structvrna__move__s}{vrna\_move\_t}} *}
27 …hyperlink{group__paths__walk_ga9594d7424dbe301f0dd3f4900db0f05c}{00102}} \mbox{\hyperlink{group__p…
32 \DoxyCodeLine{00129 \mbox{\hyperlink{group__neighbors_structvrna__move__s}{vrna\_move\_t}} *}
[all …]
H A Dgroup__command__files.tex24 file \mbox{\hyperlink{commands_8h}{commands.\+h}}
67 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
74 …hyperlink{group__command__files_gaf31afe4c5f8e4bf44a670ab4c3dcd916}{vrna\+\_\+cmd\+\_\+t}}, \mbox{…
84 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
101 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
118 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
135 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
164 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
193 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
234 {\ttfamily \#include $<$\mbox{\hyperlink{commands_8h}{Vienna\+RNA/commands.\+h}}$>$}
[all …]
H A Dconstraints_2basic_8h_source.tex8 \DoxyCodeLine{00004 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{fold__compound_8h}{ViennaR…
10 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00099}\mbox{\hyperlink{group__constraints_…
12 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00107}\mbox{\hyperlink{group__constraints_…
14 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00115}\mbox{\hyperlink{group__constraints_…
16 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00129}\mbox{\hyperlink{group__constraints_…
18 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00144}\mbox{\hyperlink{group__constraints_…
20 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00159}\mbox{\hyperlink{group__constraints_…
24 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00176}\mbox{\hyperlink{group__constraints_…
26 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00191}\mbox{\hyperlink{group__constraints_…
28 \DoxyCodeLine{\Hypertarget{constraints_2basic_8h_source_l00206}\mbox{\hyperlink{group__constraints_…
[all …]
H A Ddatastructures_2stream__output_8h_source.tex8 …hyperlink{group__buffer__utils_ga8da189552af21ab6e4e88bdcc240870c}{00018}} \textcolor{keyword}{typ…
10 …00034}\mbox{\hyperlink{group__buffer__utils_ga4adb94338a6f0a1a451e03c1bdac0d9d}{00034}} \textcolor…
14 \DoxyCodeLine{00047 \mbox{\hyperlink{group__buffer__utils_ga8da189552af21ab6e4e88bdcc240870c}{vrna\…
15 …hyperlink{group__buffer__utils_gad23113e66a0910ec2341856e2da56bf6}{00048}} \mbox{\hyperlink{group_…
20 …hyperlink{group__buffer__utils_gaf813ec90e1446ba82c89f9a39688a3b3}{00060}} \mbox{\hyperlink{group_…
28 …hyperlink{group__buffer__utils_gaebca91932705d71bcbf00bd8d82bd7c8}{00080}} \mbox{\hyperlink{group_…
33 …hyperlink{group__buffer__utils_ga6253c42abdeaf3b41a38204865e1f0f7}{00097}} \mbox{\hyperlink{group_…
H A Dfold__compound_8h.tex27 struct \mbox{\hyperlink{group__fold__compound_structvrna__fc__s}{vrna\+\_\+fc\+\_\+s}}
40 \#define \mbox{\hyperlink{group__fold__compound_gacea5b7ee6181c485f36e2afa0e9089e4}{VRNA\+\_\+\+OPT…
42 \#define \mbox{\hyperlink{group__fold__compound_gae63be9127fe7dcc1f9bb14f5bb1064ee}{VRNA\+\_\+\+OPT…
44 \#define \mbox{\hyperlink{group__fold__compound_gabfbadcddda3e74ce7f49035ef8f058f7}{VRNA\+\_\+\+OPT…
55 typedef struct \mbox{\hyperlink{group__fold__compound_structvrna__fc__s}{vrna\+\_\+fc\+\_\+s}} \mbo…
64 enum \mbox{\hyperlink{group__fold__compound_ga01a4ff86fa71deaaa5d1abbd95a1447d}{vrna\+\_\+fc\+\_\+t…
71 …hyperlink{group__fold__compound_ga1b0cef17fd40466cef5968eaeeff6166}{vrna\+\_\+fold\+\_\+compound\+…
73 …hyperlink{group__fold__compound_ga1b0cef17fd40466cef5968eaeeff6166}{vrna\+\_\+fold\+\_\+compound\+…
75 void \mbox{\hyperlink{group__fold__compound_ga576a077b418a9c3650e06f8e5d296fc2}{vrna\+\_\+fold\+\_\…
77 …hyperlink{group__fold__compound_gafc44c76a1aacf61bfccb8cd698772b98}{vrna\+\_\+fold\+\_\+compound\+…
[all …]
H A Dio_8h_source.tex24 …o_8h_source_l00052}\mbox{\hyperlink{group__energy__parameters__rw_gabb0583595c67094986ef90cb4f1c75…
29 …o_8h_source_l00066}\mbox{\hyperlink{group__energy__parameters__rw_ga0de3731b3e4017c52bd678549f6c4a…
40 …o_8h_source_l00111}\mbox{\hyperlink{group__energy__parameters__rw_ga413bc688695c9a707dbcc678412d67…
44 …o_8h_source_l00127}\mbox{\hyperlink{group__energy__parameters__rw_ga7327fe66ef60c33ba80a87c04db0ee…
48 …o_8h_source_l00143}\mbox{\hyperlink{group__energy__parameters__rw_ga804393b6dfe06a2c6cae89219dffab…
52 …o_8h_source_l00159}\mbox{\hyperlink{group__energy__parameters__rw_ga511a1c17c0fd10a1fbb0936674712f…
56 …o_8h_source_l00175}\mbox{\hyperlink{group__energy__parameters__rw_ga3a87fe5e73eb906c0fa26f2c42c787…
60 …o_8h_source_l00191}\mbox{\hyperlink{group__energy__parameters__rw_ga00e07504d66dc24aca7befb4bdaa0d…
64 …o_8h_source_l00207}\mbox{\hyperlink{group__energy__parameters__rw_gafa45b5734355baa634ca0a2e285756…
68 …o_8h_source_l00223}\mbox{\hyperlink{group__energy__parameters__rw_ga4d897130a700f86b7d4035a95f2561…
[all …]
H A Dutils_2basic_8h.tex57 …hyperlink{group__utils_ga721b8d5f3abef17f10293f1f7f8c958e}{MIN3}}(A, B, C)~(\mbox{\hyperlink{gro…
59 …hyperlink{group__utils_ga8d577123d2e66d2b7d0bf9af6e172b93}{MAX3}}(A, B, C)~(\mbox{\hyperlink{gro…
114 double \mbox{\hyperlink{utils_2basic_8h_aaa328491c84996e445d027fde9800f2e}{urn}} (void)
148 \item[\mbox{\hyperlink{deprecated__deprecated000182}{Deprecated}}]Use \mbox{\hyperlink{group__file_…
222 \item[\mbox{\hyperlink{deprecated__deprecated000187}{Deprecated}}]Use \mbox{\hyperlink{group__utils…
234 \item[\mbox{\hyperlink{deprecated__deprecated000188}{Deprecated}}]Use \mbox{\hyperlink{group__utils…
246 \item[\mbox{\hyperlink{deprecated__deprecated000189}{Deprecated}}]Use \mbox{\hyperlink{group__utils…
258 \item[\mbox{\hyperlink{deprecated__deprecated000190}{Deprecated}}]Use \mbox{\hyperlink{group__utils…
270 \item[\mbox{\hyperlink{deprecated__deprecated000191}{Deprecated}}]Use \mbox{\hyperlink{group__utils…
282 \item[\mbox{\hyperlink{deprecated__deprecated000192}{Deprecated}}]Use \mbox{\hyperlink{group__file_…
[all …]
H A Dgroup__plot__layout__utils.tex113 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
122 …hyperlink{group__plotting__utils__deprecated_ga5964c4581431b098b80027d6e14dcdd4}{rna\+\_\+plot\+\_…
132 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
141 …hyperlink{group__plotting__utils__deprecated_ga5964c4581431b098b80027d6e14dcdd4}{rna\+\_\+plot\+\_…
151 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
160 …hyperlink{group__plotting__utils__deprecated_ga5964c4581431b098b80027d6e14dcdd4}{rna\+\_\+plot\+\_…
173 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
193 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
234 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
264 {\ttfamily \#include $<$\mbox{\hyperlink{layouts_8h}{Vienna\+RNA/plotting/layouts.\+h}}$>$}
[all …]
H A Dpart__func__up_8h_source.tex8 \DoxyCodeLine{00004 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{datastructures_2basic_8h}{…
16 …hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{00061}} \mbox{\hyperlink{group__da…
19 …hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{00106}} \mbox{\hyperlink{group__da…
21 \DoxyCodeLine{00108 \mbox{\hyperlink{group__data__structures_structpu__contri…
22 \DoxyCodeLine{00109 \mbox{\hyperlink{group__data__structures_structpu__contri…
28 …hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{00118}} \textcolor{keywordtype}{vo…
30 \DoxyCodeLine{00123 \textcolor{keywordtype}{int} Up\_plot(\mbox{\hyperlink{group__data__structures_…
31 \DoxyCodeLine{00124 \mbox{\hyperlink{group__data__structures_structpu__contrib}{pu\_con…
32 \DoxyCodeLine{00125 \mbox{\hyperlink{group__data__structures_structinteract}{interact}}…
42 …hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{00141}} \textcolor{keywordtype}{vo…
[all …]
H A Dinternal_8h_source.tex8 \DoxyCodeLine{00004 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{utils_2basic_8h}{ViennaRNA…
13 \DoxyCodeLine{00009 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{hard_8h}{ViennaRNA/constra…
14 \DoxyCodeLine{00010 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{soft_8h}{ViennaRNA/constra…
44 …hyperlink{group__eval__loops__int_gaab3547bfcdc39d89babbc7ed2a1a4b65}{00064}} \mbox{\hyperlink{gro…
83 …hyperlink{group__mfe__backtracking_ga28015cfbd0afc759b94ff58cc241cb13}{00129}} \mbox{\hyperlink{gr…
92 …hyperlink{group__mfe__backtracking_ga90b5a5723173996fb40640ce7c95c07e}{00142}} \mbox{\hyperlink{gr…
193 … P-\/>\mbox{\hyperlink{group__energy__parameters_a7b84353eb9075c595bad4ceb871bcae7}{mod…
216 …hyperlink{group__soft__constraints_a32dc86090237888c75491bbd4861a04b}{f}}(i, j, p, q, \mbox{\hyper…
263 … P-\/>\mbox{\hyperlink{group__energy__parameters_a7b84353eb9075c595bad4ceb871bcae7}{mod…
286 …hyperlink{group__soft__constraints_a32dc86090237888c75491bbd4861a04b}{f}}(i, j, p, q, \mbox{\hyper…
[all …]
H A Dmove_8h.tex19 struct \mbox{\hyperlink{group__neighbors_structvrna__move__s}{vrna\+\_\+move\+\_\+s}}
28 \#define \mbox{\hyperlink{group__neighbors_ga68ea27c81de4b74e48b775c04052590b}{VRNA\+\_\+\+MOVESET\…
32 …hyperlink{group__neighbors_gaa5ffec4dd0d02df320f123e6888154d1}{VRNA\+\_\+\+MOVESET\+\_\+\+DEFAULT}…
37 typedef struct \mbox{\hyperlink{group__neighbors_structvrna__move__s}{vrna\+\_\+move\+\_\+s}} \mbox…
42 \mbox{\hyperlink{group__neighbors_ga08630e00206cd163ea29c462bf5f4755}{vrna\+\_\+move\+\_\+t}} \mbox…
44 void \mbox{\hyperlink{group__neighbors_gad085062ae3aa7ee20783debe4a906fad}{vrna\+\_\+move\+\_\+list…
46 …oid \mbox{\hyperlink{group__neighbors_gacdbc5f609b46aeb07d2c7e015677a1e0}{vrna\+\_\+move\+\_\+appl…
48 int \mbox{\hyperlink{group__neighbors_ga9cf75e9c6551f46ea568abf4f7fd11cd}{vrna\+\_\+move\+\_\+is\+\…
50 int \mbox{\hyperlink{group__neighbors_ga613d33e6fa8e784d76b34bb07458f398}{vrna\+\_\+move\+\_\+is\+\…
52 int \mbox{\hyperlink{group__neighbors_ga31a8c4c2db9f54cb8f2d2cdf3b725d4d}{vrna\+\_\+move\+\_\+is\+\…
[all …]
H A Dlandscape_2neighbor_8h.tex27 \#define \mbox{\hyperlink{group__neighbors_gae72b0e349b6108c00737df51cce44622}{VRNA\+\_\+\+NEIGHBOR…
29 \#define \mbox{\hyperlink{group__neighbors_gaf7e3417828057ae0ed4d0de03178116a}{VRNA\+\_\+\+NEIGHBOR…
31 \#define \mbox{\hyperlink{group__neighbors_ga9343dd62daad15b6b8c55c1260c09228}{VRNA\+\_\+\+NEIGHBOR…
36 …hyperlink{group__neighbors_ga4605019694e3d38e2c40d5a97ef99920}{vrna\+\_\+callback\+\_\+move\+\_\+u…
41 …hyperlink{group__neighbors_ga5ceb55ee56494b1f5b7aaa758cb722d1}{vrna\+\_\+loopidx\+\_\+update}} (in…
42 …item\em Alters the loop\+Indices array that was constructed with \mbox{\hyperlink{group__struct__u…
43 …hyperlink{group__neighbors_ga08630e00206cd163ea29c462bf5f4755}{vrna\+\_\+move\+\_\+t}} $\ast$ \mbo…
45 …hyperlink{group__neighbors_ga08630e00206cd163ea29c462bf5f4755}{vrna\+\_\+move\+\_\+t}} $\ast$ \mbo…
47 …hyperlink{group__neighbors_gad495362605ffd0168591ce41a685ee3e}{vrna\+\_\+move\+\_\+neighbor\+\_\+d…
49 …hyperlink{group__neighbors_ga08630e00206cd163ea29c462bf5f4755}{vrna\+\_\+move\+\_\+t}} $\ast$ \mbo…
H A Dpart__func__co_8h.tex19 \mbox{\hyperlink{group__pf__cofold_ga444df1587c9a2ca15b8eb25188f629c3}{vrna\+\_\+dimer\+\_\+pf\+\_\…
21 …hyperlink{group__pf__cofold_ga444df1587c9a2ca15b8eb25188f629c3}{vrna\+\_\+dimer\+\_\+pf\+\_\+t}} \…
23 …hyperlink{group__struct__utils__plist_gab9ac98ab55ded9fb90043b024b915aca}{vrna\+\_\+ep\+\_\+t}} $\…
25 …hyperlink{group__part__func__global__deprecated_ga94c19120130e66a667a10a3c8598550c}{compute\+\_\+p…
27 void \mbox{\hyperlink{group__part__func__global__deprecated_gaa12dda9dd6179cdd22bcce87c0682c07}{ini…
29 \mbox{\hyperlink{group__data__structures_ga31125aeace516926bf7f251f759b6126}{FLT\+\_\+\+OR\+\_\+\+D…
31 void \mbox{\hyperlink{group__part__func__global__deprecated_gade3ce34ae8214811374b1d28a40dc247}{fre…
35 …hyperlink{group__part__func__global__deprecated_ga75465d7e8793db68a434d83df9a2e794}{update\+\_\+co…
40 int \mbox{\hyperlink{group__pf__cofold_gaff27888c4088cc1f60fd59cbd589474c}{mirnatog}}
42 double \mbox{\hyperlink{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{F\+\_\+monomer}} \mbo…
[all …]
H A Dannotated.tex3 …m\contentsline{section}{\mbox{\hyperlink{struct__struct__en}{\+\_\+struct\+\_\+en}} \\*Data struct…
4 \item\contentsline{section}{\mbox{\hyperlink{structLIST}{LIST}} }{\pageref{structLIST}}{}
5 \item\contentsline{section}{\mbox{\hyperlink{structLST__BUCKET}{LST\+\_\+\+BUCKET}} }{\pageref{stru…
6 \item\contentsline{section}{\mbox{\hyperlink{structPostorder__list}{Postorder\+\_\+list}} \\*Postor…
7 \item\contentsline{section}{\mbox{\hyperlink{structswString}{sw\+String}} \\*Some other data struct…
8 \item\contentsline{section}{\mbox{\hyperlink{structTree}{Tree}} \\*\mbox{\hyperlink{structTree}{Tre…
9 \item\contentsline{section}{\mbox{\hyperlink{structTwoDpfold__vars}{Two\+Dpfold\+\_\+vars}} \\*Vari…
11 \item\contentsline{section}{\mbox{\hyperlink{structvrna__sc__bp__storage__t}{vrna\+\_\+sc\+\_\+bp\+…
12 \item\contentsline{section}{\mbox{\hyperlink{structvrna__sc__motif__s}{vrna\+\_\+sc\+\_\+motif\+\_\…
13 \item\contentsline{section}{\mbox{\hyperlink{structvrna__structured__domains__s}{vrna\+\_\+structur…
[all …]
H A Dcentroid_8h_source.tex8 \DoxyCodeLine{00004 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{datastructures_2basic_8h}{…
9 \DoxyCodeLine{00005 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{fold__compound_8h}{ViennaR…
10 \DoxyCodeLine{00006 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{utils_2structures_8h}{Vien…
25 …hyperlink{group__centroid__fold_ga0e64bb67e51963dc71cbd4d30b80a018}{00040}} \mbox{\hyperlink{group…
30 …troid_8h_source_l00061}\mbox{\hyperlink{group__centroid__fold_ga13881673a0b214d42a59140ef5764dbb}{…
32 \DoxyCodeLine{00063 \mbox{\hyperlink{group__struct__utils__plist_structvrn…
36 …troid_8h_source_l00083}\mbox{\hyperlink{group__centroid__fold_ga98193ede06778a9ea966cc8fc43d0804}{…
38 \DoxyCodeLine{00085 \mbox{\hyperlink{group__data__structures_ga31125aeace5…
43 \DoxyCodeLine{00095 DEPRECATED(\textcolor{keywordtype}{char} *\mbox{\hyperlink{centroid_8h_a7dcc64b…
45 \DoxyCodeLine{00097 \mbox{\hyperlink{group__struct__utils__…
[all …]
H A Dconcentrations_8h_source.tex5 \DoxyCodeLine{\Hypertarget{concentrations_8h_source_l00001}\mbox{\hyperlink{group__pf__cofold_ga462…
20 …f} \textcolor{keyword}{struct }\mbox{\hyperlink{structvrna__dimer__conc__s}{vrna\_dimer\_conc\_s}}…
25 …f} \textcolor{keyword}{struct }\mbox{\hyperlink{structvrna__dimer__conc__s}{vrna\_dimer\_conc\_s}}…
29 \DoxyCodeLine{00040 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{params_2basic_8h}{ViennaRN…
31 …ations_8h_source_l00045}\mbox{\hyperlink{structvrna__dimer__conc__s}{00045}} \textcolor{keyword}{s…
32 …046}\mbox{\hyperlink{structvrna__dimer__conc__s_a6e64ce1afbc93756afef06c0e3ccce97}{00046}} \text…
33 …047}\mbox{\hyperlink{structvrna__dimer__conc__s_a5763381efee22a0bbec2f2d0754f7697}{00047}} \text…
34 …048}\mbox{\hyperlink{structvrna__dimer__conc__s_aef56a1fe8d7f07e7b5d9a65417dda8a4}{00048}} \text…
42 …hyperlink{group__pf__cofold_ga83b8d5d0f7875d6d5013b208f23e3356}{00075}} \mbox{\hyperlink{structvrn…
48 … \textcolor{keyword}{const} \mbox{\hyperlink{group__energy__p…
[all …]
H A Dlandscape_2findpath_8h_source.tex20 \DoxyCodeLine{00030 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{fold__compound_8h}{ViennaR…
21 \DoxyCodeLine{00031 \textcolor{preprocessor}{\#include <\mbox{\hyperlink{paths_8h}{ViennaRNA/landsc…
24 …hyperlink{group__paths__direct_gad77dbfa125158f534147c0015a849bc3}{00055}} \mbox{\hyperlink{group_…
31 …hyperlink{group__paths__direct_gaca6d3ab6f8b9463e3382bd1f474c26f1}{00088}} \mbox{\hyperlink{group_…
38 \DoxyCodeLine{00116 \mbox{\hyperlink{group__paths_structvrna__path__s}{vrna\_path\_t}} *}
39 …hyperlink{group__paths__direct_ga2fed8ff126f5becd82cedd81a25c9bf0}{00117}} \mbox{\hyperlink{group_…
45 \DoxyCodeLine{00150 \mbox{\hyperlink{group__paths_structvrna__path__s}{vrna\_path\_t}} *}
46 …hyperlink{group__paths__direct_gad00765c2f269fddfa319310af22d4f67}{00151}} \mbox{\hyperlink{group_…
64 …e{00194 \mbox{\hyperlink{group__paths__deprecated_ga9056421d716ae89f0ed3f107627f395b}{f…
68 \DoxyCodeLine{00214 DEPRECATED(\mbox{\hyperlink{group__paths_structvrna__path__s}{vrna\_path\_t}} *}
[all …]
H A Dgquad_8h_source.tex128 \DoxyCodeLine{00154 \mbox{\hyperlink{group__struct__utils__plist_structvrna__elem__prob__s}{plist}}…
134 \DoxyCodeLine{00160 \mbox{\hyperlink{group__struct__utils__plist_structvrna__elem__prob__s}{plist}}…
295 …yCodeLine{00331 \mbox{\hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangl…
298 …34 ggg = vc-\/>\mbox{\hyperlink{group__fold__compound_aca8be7bdc65bafe2172c6ee777f18568}{mat…
386 …hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}} = P-\/>\mbox{\hyperl…
488 …hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}} = P-\/>\mbox{\hyperl…
613 …hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}} = P-\/>\mbox{\hyperl…
720 …le\_model = P-\/>\mbox{\hyperlink{group__energy__parameters_a7b84353eb9075c595bad4ceb871bcae7}{mod…
843 …hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}} = P-\/>\mbox{\hyperl…
1252 …hyperlink{group__model__details_ga72b511ed1201f7e23ec437e468790d74}{dangles}} = P-\/>\mbox{\hyperl…
[all …]
/dports/devel/libfortuna/libfortuna-11cbd88/doc/latex/
H A Drijndael_8h.tex8 struct \hyperlink{struct__rijndael__ctx}{\-\_\-rijndael\-\_\-ctx}
13 typedef \hyperlink{c_8h_adde6aaee8457bee49c2a92621fe22b79}{uint8} \hyperlink{rijndael_8h_ae1baf4ea6…
15 typedef \hyperlink{c_8h_a05f6b0ae8f6a6e135b0e290c25fe0e4e}{uint16} \hyperlink{rijndael_8h_ab082017e…
17 typedef \hyperlink{c_8h_a1134b580f8da4de94ca6b1de4d37975e}{uint32} \hyperlink{rijndael_8h_addeada50…
19 typedef \hyperlink{c_8h_a1b956fe1df85f3c132b21edb4e116458}{int8} \hyperlink{rijndael_8h_ad1645dbbde…
21 typedef \hyperlink{c_8h_a259fa4834387bd68627ddf37bb3ebdb9}{int16} \hyperlink{rijndael_8h_abb4eda2bf…
23 typedef \hyperlink{c_8h_a43d43196463bde49cb067f5c20ab8481}{int32} \hyperlink{rijndael_8h_ab356e63cf…
25 typedef struct \hyperlink{struct__rijndael__ctx}{\-\_\-rijndael\-\_\-ctx} \hyperlink{rijndael_8h_a2…
30 …hyperlink{rijndael_8h_a2ee3f8edff4b0b6b1b668739d13a06fc}{rijndael\-\_\-ctx} $\ast$ \hyperlink{rijn…
32 …hyperlink{rijndael_8h_ab4efda33bbdbc0aa590038179386e4b3}{rijndael\-\_\-encrypt} (\hyperlink{rijnda…
[all …]
/dports/lang/rust/rustc-1.58.1-src/src/test/rustdoc-ui/
H A Dbare-urls.fixed6 //~^ ERROR this URL is not a hyperlink
8 //~^ ERROR this URL is not a hyperlink
10 //~^ ERROR this URL is not a hyperlink
12 //~^ ERROR this URL is not a hyperlink
14 //~^ ERROR not a hyperlink
16 //~^ ERROR this URL is not a hyperlink
18 //~^ ERROR this URL is not a hyperlink
20 //~^ ERROR this URL is not a hyperlink
22 //~^ ERROR this URL is not a hyperlink
24 //~^ ERROR this URL is not a hyperlink
[all …]
/dports/x11-toolkits/guile-gnome-platform/guile-gnome-platform-2.16.5/atk/doc/
H A Ddefuns-atkhyperlink.xml.texi4 @deftp Class <atk-hyperlink>
26 @defop Signal <atk-hyperlink> link-activated
39 an @code{<atk-hyperlink>}
55 text hyperlink, @code{<atk-image>} if @var{link} is an image hyperlink etc.
61 an @code{<atk-hyperlink>}
79 an @code{<atk-hyperlink>}
94 an @code{<atk-hyperlink>}
111 an @code{<atk-hyperlink>}
128 an @code{<atk-hyperlink>}
143 an @code{<atk-hyperlink>}
[all …]

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