| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/ |
| H A D | buf_data_loader.cpp | 73 CDataLoader::TTSE_LockSet CBuffer_DataLoader::GetRecords(const CSeq_id_Handle& idh, EChoice choice) in GetRecords() argument
85 TBlobId blob_id = GetBlobId(idh); in GetRecords()
103 CDataLoader::TBlobId CBuffer_DataLoader::GetBlobId(const CSeq_id_Handle& idh) in GetBlobId() argument
105 TBlobId blob_id = new CBlobIdSeq_id(idh); in GetBlobId()
406 void CBuffer_DataLoader::x_LoadData(const CSeq_id_Handle& idh, CTSE_LoadLock& lock) in x_LoadData() argument
413 if (get_accession_from_id(*idh.GetSeqId(), accession, version)) { in x_LoadData()
419 … CRef<CBioseq> bioseq = parse_entry(m_parser, entry_str, accession, version, *idh.GetSeqId()); in x_LoadData()
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/media/usb/stkwebcam/ |
| H A D | stk-sensor.c | 358 u8 idh = 0; in stk_sensor_init() local
368 if (stk_sensor_inb(dev, REG_MIDH, &idh) in stk_sensor_init()
373 if (idh != 0x7f || idl != 0xa2) { in stk_sensor_init()
377 if (stk_sensor_inb(dev, REG_PID, &idh) in stk_sensor_init()
385 idh, idl, SENSOR_ADDRESS); in stk_sensor_init()
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| /dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/media/usb/stkwebcam/ |
| H A D | stk-sensor.c | 358 u8 idh = 0; in stk_sensor_init() local
368 if (stk_sensor_inb(dev, REG_MIDH, &idh) in stk_sensor_init()
373 if (idh != 0x7f || idl != 0xa2) { in stk_sensor_init()
377 if (stk_sensor_inb(dev, REG_PID, &idh) in stk_sensor_init()
385 idh, idl, SENSOR_ADDRESS); in stk_sensor_init()
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| /dports/multimedia/libv4l/linux-5.13-rc2/drivers/media/usb/stkwebcam/ |
| H A D | stk-sensor.c | 358 u8 idh = 0; in stk_sensor_init() local
368 if (stk_sensor_inb(dev, REG_MIDH, &idh) in stk_sensor_init()
373 if (idh != 0x7f || idl != 0xa2) { in stk_sensor_init()
377 if (stk_sensor_inb(dev, REG_PID, &idh) in stk_sensor_init()
385 idh, idl, SENSOR_ADDRESS); in stk_sensor_init()
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| /dports/lang/ocaml/ocaml-4.05.0/testsuite/tests/misc/ |
| H A D | bdd.ml | 49 let rec insert idl idh v ind bucket newNode =
54 let ind = hashVal idl idh v land (!sz_1)
69 let idh = getId high
71 if idl = idh
73 else let ind = hashVal idl idh v land (!sz_1) in
83 if v = v' && idl = getId l && idh = getId h
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| /dports/lang/ocaml-nox11/ocaml-4.05.0/testsuite/tests/misc/ |
| H A D | bdd.ml | 49 let rec insert idl idh v ind bucket newNode =
54 let ind = hashVal idl idh v land (!sz_1)
69 let idh = getId high
71 if idl = idh
73 else let ind = hashVal idl idh v land (!sz_1) in
83 if v = v' && idl = getId l && idh = getId h
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
| H A D | scope_info.hpp | 278 SSeqMatch_Scope BestResolve(const CSeq_id_Handle& idh, int get_flag);
279 SSeqMatch_Scope Resolve(const CSeq_id_Handle& idh, CTSE_ScopeInfo& tse);
292 SSeqMatch_Scope x_GetSeqMatch(const CSeq_id_Handle& idh);
293 SSeqMatch_Scope x_FindBestTSE(const CSeq_id_Handle& idh);
296 const CSeq_id_Handle& idh) const;
302 TTSE_ScopeInfo x_FindBestTSEInIndex(const CSeq_id_Handle& idh) const;
303 static bool x_IsBetter(const CSeq_id_Handle& idh,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
| H A D | scope_info.hpp | 278 SSeqMatch_Scope BestResolve(const CSeq_id_Handle& idh, int get_flag);
279 SSeqMatch_Scope Resolve(const CSeq_id_Handle& idh, CTSE_ScopeInfo& tse);
292 SSeqMatch_Scope x_GetSeqMatch(const CSeq_id_Handle& idh);
293 SSeqMatch_Scope x_FindBestTSE(const CSeq_id_Handle& idh);
296 const CSeq_id_Handle& idh) const;
302 TTSE_ScopeInfo x_FindBestTSEInIndex(const CSeq_id_Handle& idh) const;
303 static bool x_IsBetter(const CSeq_id_Handle& idh,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | sequence.cpp | 451 if (!idh) return ret; in GetId()
455 return idh; in GetId()
471 idh.IsGi()) return idh; in GetId()
484 ret = idh; in GetId()
523 return idh; in GetId()
538 if ( idh.IsGi() ) { in GetGiForAccession()
564 if ( idh.IsGi() ) { in GetGiForId()
565 return idh.GetGi(); in GetGiForId()
586 if ( idh ) { in GetAccessionForGi()
607 if ( idh ) { in GetAccessionForId()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | sequence.cpp | 451 if (!idh) return ret; in GetId()
455 return idh; in GetId()
471 idh.IsGi()) return idh; in GetId()
484 ret = idh; in GetId()
523 return idh; in GetId()
538 if ( idh.IsGi() ) { in GetGiForAccession()
564 if ( idh.IsGi() ) { in GetGiForId()
565 return idh.GetGi(); in GetGiForId()
586 if ( idh ) { in GetAccessionForGi()
607 if ( idh ) { in GetAccessionForId()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
| H A D | sequtils.cpp | 67 CSeq_id_Handle idh = sequence::GetId(*bsh.GetSeqId(), bsh.GetScope(), in BEGIN_SCOPE() local
69 CSeq_id::EAccessionInfo id_info = idh.GetSeqId()->IdentifyAccession(); in BEGIN_SCOPE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqset/ |
| H A D | Seq_entry.cpp | 318 CSeq_id_Handle sx_MakeUniqueId(const CSeq_id_Handle& idh, TIdMap& id_map) in sx_MakeUniqueId() argument
320 CRef<CSeq_id> new_id(SerialClone(*idh.GetSeqId())); in sx_MakeUniqueId()
349 CSeq_id_Handle& suffix_id = id_map[TIdKey(idh, null)]; in sx_MakeUniqueId()
532 CSeq_id_Handle idh = CSeq_id_Handle::GetHandle(id); in sx_ProcessId() local
533 auto id_it = id_map.find(TIdKey(idh, null)); in sx_ProcessId()
538 const CSeq_id_Handle& new_id = sx_FindBestId(id_map, cache, entry, idh); in sx_ProcessId()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqset/ |
| H A D | Seq_entry.cpp | 318 CSeq_id_Handle sx_MakeUniqueId(const CSeq_id_Handle& idh, TIdMap& id_map) in sx_MakeUniqueId() argument
320 CRef<CSeq_id> new_id(SerialClone(*idh.GetSeqId())); in sx_MakeUniqueId()
349 CSeq_id_Handle& suffix_id = id_map[TIdKey(idh, null)]; in sx_MakeUniqueId()
532 CSeq_id_Handle idh = CSeq_id_Handle::GetHandle(id); in sx_ProcessId() local
533 auto id_it = id_map.find(TIdKey(idh, null)); in sx_ProcessId()
538 const CSeq_id_Handle& new_id = sx_FindBestId(id_map, cache, entry, idh); in sx_ProcessId()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/snp/ |
| H A D | snploader.cpp | 295 CSNPDataLoader::GetRecords(const CSeq_id_Handle& idh, in GetRecords() argument
298 return m_Impl->GetRecords(GetDataSource(), idh, choice); in GetRecords()
303 CSNPDataLoader::GetOrphanAnnotRecordsNA(const CSeq_id_Handle& idh, in GetOrphanAnnotRecordsNA() argument
307 return m_Impl->GetOrphanAnnotRecords(GetDataSource(), idh, sel, processed_nas); in GetOrphanAnnotRecordsNA()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | glimmer_reader.cpp | 69 CSeq_id_Handle idh; in Read() local
95 idh = CSeq_id_Handle::GetHandle(*best); in Read()
97 CBioseq_Handle bsh = scope.GetBioseqHandle(idh); in Read()
262 cds_feat->SetLocation().SetId(*idh.GetSeqId()); in Read()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | glimmer_reader.cpp | 69 CSeq_id_Handle idh; in Read() local
95 idh = CSeq_id_Handle::GetHandle(*best); in Read()
97 CBioseq_Handle bsh = scope.GetBioseqHandle(idh); in Read()
262 cds_feat->SetLocation().SetId(*idh.GetSeqId()); in Read()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/server/ |
| H A D | cdd_processor.cpp | 155 CSeq_id_Handle idh; in x_ProcessResolveRequest() local
158 idh = CSeq_id_Handle::GetHandle(id); in x_ProcessResolveRequest()
171 ids.insert(idh); in x_ProcessResolveRequest()
186 CCDDClientPool::TBlobInfo blob_info = m_ClientPool->GetBlobIdBySeq_id(idh); in x_ProcessResolveRequest()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/ |
| H A D | seq_loc_mapper_base.cpp | 885 if (idh) { in x_InitializeFeat()
886 SetSeqTypeById(idh, loc_type); in x_InitializeFeat()
893 if (idh) { in x_InitializeFeat()
1323 if (idh == *it) return true; in x_IsSynonym()
2240 SetSeqTypeById(idh, seqtype); in GetSeqType()
2289 m_LengthMap[idh] = len; in GetSequenceLength()
2325 if ( !idh ) continue; // NULL? in x_CheckSeqTypes()
2369 if ( !idh ) continue; // NULL? in x_ForceSeqTypes()
2370 idh = CollectSynonyms(idh); in x_ForceSeqTypes()
3724 x_RangeToSeq_loc(const CSeq_id_Handle& idh, in x_RangeToSeq_loc() argument
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seq/ |
| H A D | seq_loc_mapper_base.cpp | 885 if (idh) { in x_InitializeFeat()
886 SetSeqTypeById(idh, loc_type); in x_InitializeFeat()
893 if (idh) { in x_InitializeFeat()
1323 if (idh == *it) return true; in x_IsSynonym()
2240 SetSeqTypeById(idh, seqtype); in GetSeqType()
2289 m_LengthMap[idh] = len; in GetSequenceLength()
2325 if ( !idh ) continue; // NULL? in x_CheckSeqTypes()
2369 if ( !idh ) continue; // NULL? in x_ForceSeqTypes()
2370 idh = CollectSynonyms(idh); in x_ForceSeqTypes()
3724 x_RangeToSeq_loc(const CSeq_id_Handle& idh, in x_RangeToSeq_loc() argument
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/asn_cache/ |
| H A D | asn_cache_test.cpp | 365 … CSeq_id_Handle idh = CSeq_id_Handle::GetHandle(*feat->GetProduct().GetId()); in Run() local
366 CBioseq_Handle bsh = m_LocalCacheScope->GetBioseqHandle(idh); in Run()
373 … idh = CSeq_id_Handle::GetHandle( *(*delta)->GetLoc().GetId() ); in Run()
379 LOG_POST(Warning<<"Can't get seqinst for " << idh); in Run()
382 << idh << endl; in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/ |
| H A D | bdbloader_rmt.cpp | 168 const CSeq_id_Handle& idh = tse_set->first; in GetBlobs() local
169 CConstRef<CSeq_id> const_id = idh.GetSeqId(); in GetBlobs()
187 const CSeq_id_Handle& idh = tse_set->first; in GetBlobs() local
188 TBlobId blob_id = new CBlobIdBlastDb(TBlastDbId(oids[i], idh)); in GetBlobs()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/ |
| H A D | bdbloader_rmt.cpp | 168 const CSeq_id_Handle& idh = tse_set->first; in GetBlobs() local
169 CConstRef<CSeq_id> const_id = idh.GetSeqId(); in GetBlobs()
187 const CSeq_id_Handle& idh = tse_set->first; in GetBlobs() local
188 TBlobId blob_id = new CBlobIdBlastDb(TBlastDbId(oids[i], idh)); in GetBlobs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/cdd/cdd_loader/ |
| H A D | cdd_loader.hpp | 82 TTSE_LockSet GetRecords(const CSeq_id_Handle& idh, EChoice choice) override;
83 TTSE_LockSet GetOrphanAnnotRecordsNA(const CSeq_id_Handle& idh,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/agp_validate/ |
| H A D | AgpFastaComparator.hpp | 83 string GetFileName( EType type, objects::CSeq_id_Handle idh );
128 const objects::CSeq_id_Handle & idh,
|
| /dports/textproc/translate-toolkit/translate-toolkit-3.5.1/share/langmodels/ |
| H A D | scots_gaelic.lm | 44 idh 358
164 àidh 118
230 Gàidh 86
|