/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | salsap.c | 370 if (csp->starts!= NULL) MemFree (csp->starts); in CompSeqAlignFree() 371 csp->starts=NULL; in CompSeqAlignFree() 857 dsp->starts = starts; in build_seqalign_fromstart() 862 MemFree (starts); in build_seqalign_fromstart() 2076 dsp->starts = MemFree (dsp->starts); in CutAlignmentSegment() 2784 dsp->starts = MemFree (dsp->starts); in SeqAlignInsertByLoc() 2785 dsp->starts = dsp_new->starts; in SeqAlignInsertByLoc() 2940 if (laststart < *(ddp->starts) && minstart > *(ddp->starts)) { in DenseDiagToDenseSegFunc() 3341 ddp_copy->starts [j] = *starts; in DenseDiagCreate() 3400 if ( *(ddp->starts) < *(ddp_tmp->starts) ) in DenseDiagLinkSort() [all …]
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/dports/science/pnetcdf/parallel-netcdf-1.8.1/examples/F77/ |
H A D | fill_mode.f | 77 integer*8 starts(2), counts(2) variable 170 starts(1) = nx * rank + 1 171 starts(2) = 1 177 err = nfmpi_put_vara_int_all(ncid, fix_varid, starts, counts, 189 starts(2) = 1 190 err = nfmpi_fill_var_rec(ncid, rec_varid, starts(2)) 195 err = nfmpi_put_vara_int_all(ncid, rec_varid, starts, counts, 200 starts(2) = 2 201 err = nfmpi_fill_var_rec(ncid, rec_varid, starts(2)) 205 err = nfmpi_put_vara_int_all(ncid, rec_varid, starts, counts,
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/dports/science/pnetcdf/parallel-netcdf-1.8.1/examples/F90/ |
H A D | fill_mode.f90 | 81 integer(kind=MPI_OFFSET_KIND) starts(2), counts(2) variable 164 starts(1) = nx * rank + 1 165 starts(2) = 1 171 err = nf90mpi_put_var_all(ncid, fix_varid, buf, starts, counts) 182 starts(2) = 1 183 err = nf90mpi_fill_var_rec(ncid, rec_varid, starts(2)) 188 err = nf90mpi_put_var_all(ncid, rec_varid, buf, starts, counts) 192 starts(2) = 2 193 err = nf90mpi_fill_var_rec(ncid, rec_varid, starts(2)) 197 err = nf90mpi_put_var_all(ncid, rec_varid, buf, starts, counts)
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/mergetree/tests/ |
H A D | AF279874_AC232323.asnt | 35 starts { 202 starts { 409 starts { 676 starts { 823 starts { 920 starts { 1057 starts { 1134 starts { 1261 starts { 1308 starts { [all …]
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/ |
H A D | Longest_orf.pm | 152 my (@starts, @stops, @orfs); 157 @starts = $self->identify_putative_starts($input_sequence,\@stops); 158 @orfs = $self->get_orfs (\@starts, \@stops, $input_sequence, '+'); 353 my %starts; 360 $starts{0} = 1 unless $stops{0}; 361 $starts{1} = 1 unless $stops{1}; 362 $starts{2} = 1 unless $stops{2}; 368 $starts{$start_pos} = 1; 377 $starts{$candidate_non_met_start} = 1; 381 my @starts = sort {$a<=>$b} keys %starts; [all …]
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/dports/science/py-nibabel/nibabel-3.2.1/nibabel/tests/ |
H A D | test_minc2_data.py | 27 def _make_affine(coses, zooms, starts): argument 32 affine[:3, 3] = np.dot(R, starts) 42 starts = [117.25609125, 138.89861125, -54.442028] variable in TestEPIFrame 49 starts[::-1]), 83 starts = [105.473101260826, 151.74885125, -61.8714747993248] variable in TestB0 90 starts[::-1]), 114 starts = [-75.76775, 115.80462, 81.38605] variable in TestGado 121 starts[::-1]), 134 starts = [-90, -126, -12] variable in TestT1 141 starts[::-1]),
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/dports/www/elgg/elgg-3.3.23/mod/search/classes/Elgg/Search/ |
H A D | Highlighter.php | 90 $starts = []; 103 $starts[] = $start; 115 $starts[] = $start; 121 $offsets = $this->consolidateSubstrings($starts, $lengths); 129 $starts = []; 134 $starts[] = $start; 138 $offsets = $this->consolidateSubstrings($starts, $lengths); 171 $starts = array_keys($return_strs); 172 $last_pos = $starts[count($starts) - 1];
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/dports/www/elgg/elgg-3.3.23/vendor/elgg/elgg/mod/search/classes/Elgg/Search/ |
H A D | Highlighter.php | 90 $starts = []; 103 $starts[] = $start; 115 $starts[] = $start; 121 $offsets = $this->consolidateSubstrings($starts, $lengths); 129 $starts = []; 134 $starts[] = $start; 138 $offsets = $this->consolidateSubstrings($starts, $lengths); 171 $starts = array_keys($return_strs); 172 $last_pos = $starts[count($starts) - 1];
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/dports/editors/texmacs/TeXmacs-1.99.4-src/src/Plugins/Freetype/ |
H A D | tt_file.cpp | 68 !starts (name, "ec") && in tt_locate() 69 !starts (name, "la") && in tt_locate() 70 !starts (name, "cm") && in tt_locate() 71 !starts (name, "msam") && in tt_locate() 72 !starts (name, "msbm") && in tt_locate() 73 !starts (name, "bbm") && in tt_locate() 74 !starts (name, "stmary") && in tt_locate() 75 !starts (name, "rsfs") && in tt_locate() 76 !starts (name, "grmn") && in tt_locate() 77 !starts (name, "mac-") in tt_locate()
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/dports/x11/plasma5-plasma-workspace/plasma-workspace-5.23.5/startkde/plasmaautostart/ |
H A D | plasmaautostart.cpp | 82 bool starts = df->desktopGroup().exists(); in autostarts() local 85 starts = starts && !df->desktopGroup().readEntry("Hidden", false); in autostarts() 88 starts = starts && checkAllowedEnvironment(environment); in autostarts() 92 starts = starts && df->tryExec(); in autostarts() 96 starts = starts && checkStartCondition(); in autostarts() 99 return starts; in autostarts()
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/dports/science/pnetcdf/parallel-netcdf-1.8.1/test/nonblocking/ |
H A D | i_varn_indef.c | 188 MPI_Offset **starts[4], **counts[4]; in main() local 250 starts[i] = starts[i-1] + 6; in main() 252 starts[i][0] = starts[i-1][0] + 6 * NDIMS; in main() 257 starts[i][j] = starts[i][j-1] + NDIMS; in main() 268 starts[i][j][k] = n_starts[n][j][k]; in main() 409 permute(starts[i][0], starts[i][2]); permute(counts[i][0], counts[i][2]); in main() 410 permute(starts[i][1], starts[i][3]); permute(counts[i][1], counts[i][3]); in main() 521 permute(starts[i][0], starts[i][2]); permute(counts[i][0], counts[i][2]); in main() 522 permute(starts[i][1], starts[i][3]); permute(counts[i][1], counts[i][3]); in main() 585 free(starts[0][0]); in main() [all …]
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/dports/www/grafana8/grafana-8.3.6/vendor/github.com/ohler55/ojg/gen/ |
H A D | parser.go | 26 starts []int member 74 p.starts = p.starts[:0] 127 p.starts = p.starts[:0] 188 depth := len(p.starts) 235 if 0 < len(p.starts) && p.starts[len(p.starts)-1] == -1 { 268 if 0 < len(p.starts) && p.starts[len(p.starts)-1] == -1 { 281 p.starts = append(p.starts, -1) 309 p.starts = p.starts[0:depth] 346 p.starts = append(p.starts, len(p.stack)) 361 start := p.starts[len(p.starts)-1] + 1 [all …]
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/dports/mail/thunderbird/thunderbird-91.8.0/third_party/rust/gfx-backend-dx12/src/ |
H A D | descriptors_cpu.rs | 191 starts: Vec<CpuDescriptor>, field 197 self.starts.push(start); in add() 202 self.starts.clear(); in clear() 225 if !self.src_views.starts.is_empty() { in flush() 227 self.dst_views.starts.len() as u32, in flush() 228 self.dst_views.starts.as_ptr(), in flush() 230 self.src_views.starts.len() as u32, in flush() 231 self.src_views.starts.as_ptr(), in flush() 236 if !self.src_samplers.starts.is_empty() { in flush() 239 self.dst_samplers.starts.as_ptr(), in flush() [all …]
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/dports/www/firefox-esr/firefox-91.8.0/third_party/rust/gfx-backend-dx12/src/ |
H A D | descriptors_cpu.rs | 191 starts: Vec<CpuDescriptor>, field 197 self.starts.push(start); in add() 202 self.starts.clear(); in clear() 225 if !self.src_views.starts.is_empty() { in flush() 227 self.dst_views.starts.len() as u32, in flush() 228 self.dst_views.starts.as_ptr(), in flush() 230 self.src_views.starts.len() as u32, in flush() 231 self.src_views.starts.as_ptr(), in flush() 236 if !self.src_samplers.starts.is_empty() { in flush() 239 self.dst_samplers.starts.as_ptr(), in flush() [all …]
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/dports/textproc/clucene/clucene-core-2.3.3.4/src/core/CLucene/search/ |
H A D | MultiSearcher.cpp | 41 starts = _CL_NEWARRAY(int32_t,searchablesLen + 1); // build starts array in MultiSearcher() 44 starts[i] = _maxDoc; in MultiSearcher() 47 starts[searchablesLen] = _maxDoc; in MultiSearcher() 52 _CLDELETE_ARRAY(starts); in ~MultiSearcher() 56 return starts; in getStarts() 80 return searchables[i]->doc(n - starts[i], d); // dispatch to searcher in doc() 97 midValue = starts[mid]; in subSearcher() 103 while (mid+1 < searchablesLen && starts[mid+1] == midValue) { in subSearcher() 115 return n - starts[subSearcher(n)]; in subDoc() 133 scoreDocs[j].doc += starts[i]; // convert doc in _search() [all …]
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/dports/devel/elm-format/elm-format-0.8.3/markdown/tests/Code/ |
H A D | IndentedInLists.markdown | 1 - code starts here 5 code starts here 9 code starts here 13 code starts here 17 code starts here
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/unit_test/data/ |
H A D | aligns4.asn | 12 starts { 38 starts { 71 starts { 112 starts { 123 starts { 134 starts { 151 starts { 165 starts { 179 starts { 199 starts { [all …]
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/dports/textproc/p5-KinoSearch1/KinoSearch1-1.01/lib/KinoSearch1/Search/ |
H A D | MultiSearcher.pm | 12 starts => undef, 25 my @starts; 27 push @starts, $max_doc; 31 $self->{starts} = \@starts; 55 for ( @{ $self->{starts} } ) { 73 $doc_num -= $self->{starts}[$i]; 88 my ( $searchables, $starts ) = @{$self}{qw( searchables starts )}; 92 my $start = $starts->[$i];
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/dports/devel/codeblocks/codeblocks-20.03/src/sdk/wxscintilla/src/scintilla/lexlib/ |
H A D | WordList.cxx | 69 starts[0] = -1; in WordList() 133 std::fill(starts, starts + ELEMENTS(starts), -1); in Set() 136 starts[indexChar] = l; in Set() 149 int j = starts[firstChar]; in InList() 165 j = starts[static_cast<unsigned int>('^')]; in InList() 191 int j = starts[firstChar]; in InListAbbreviated() 217 j = starts[static_cast<unsigned int>('^')]; in InListAbbreviated() 245 int j = starts[firstChar]; in InListAbridged() 268 j = starts[static_cast<unsigned int>(marker)]; in InListAbridged()
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/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/optimization/ |
H A D | BaseMultivariateMultiStartOptimizer.java | 53 private int starts; field in BaseMultivariateMultiStartOptimizer 72 final int starts, in BaseMultivariateMultiStartOptimizer() argument 78 if (starts < 1) { in BaseMultivariateMultiStartOptimizer() 79 throw new NotStrictlyPositiveException(starts); in BaseMultivariateMultiStartOptimizer() 83 this.starts = starts; in BaseMultivariateMultiStartOptimizer() 143 optima = new PointValuePair[starts]; in optimize() 147 for (int i = 0; i < starts; ++i) { in optimize()
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/dports/databases/sqlitebrowser/sqlitebrowser-3.12.1/libs/qscintilla/src/ |
H A D | CellBuffer.cpp | 90 Partitioning<POS> starts; member in LineStartIndex 101 starts.DeleteAll(); in ~LineStartIndex() 105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate() 115 starts.DeleteAll(); in Release() 135 Partitioning<POS> starts; member in LineVector 151 starts.DeleteAll(); in Init() 155 startsUTF32.starts.DeleteAll(); in Init() 215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex() [all …]
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/dports/devel/qscintilla2-qt5/QScintilla_src-2.13.0/scintilla/src/ |
H A D | CellBuffer.cpp | 90 Partitioning<POS> starts; member in LineStartIndex 101 starts.DeleteAll(); in ~LineStartIndex() 105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate() 115 starts.DeleteAll(); in Release() 135 Partitioning<POS> starts; member in LineVector 151 starts.DeleteAll(); in Init() 155 startsUTF32.starts.DeleteAll(); in Init() 215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex() [all …]
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/dports/devel/qscintilla2-designerplugin-qt5/QScintilla_src-2.13.0/scintilla/src/ |
H A D | CellBuffer.cpp | 90 Partitioning<POS> starts; member in LineStartIndex 101 starts.DeleteAll(); in ~LineStartIndex() 105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate() 115 starts.DeleteAll(); in Release() 135 Partitioning<POS> starts; member in LineVector 151 starts.DeleteAll(); in Init() 155 startsUTF32.starts.DeleteAll(); in Init() 215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex() [all …]
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/dports/devel/py-qt5-qscintilla2/QScintilla_src-2.13.0/scintilla/src/ |
H A D | CellBuffer.cpp | 90 Partitioning<POS> starts; member in LineStartIndex 101 starts.DeleteAll(); in ~LineStartIndex() 105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate() 115 starts.DeleteAll(); in Release() 135 Partitioning<POS> starts; member in LineVector 151 starts.DeleteAll(); in Init() 155 startsUTF32.starts.DeleteAll(); in Init() 215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth() 238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex() [all …]
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/dports/lang/mono/mono-5.10.1.57/external/api-doc-tools/external/Lucene.Net.Light/src/core/Search/ |
H A D | MultiSearcher.cs | 174 private int[] starts; field in Lucene.Net.Search.MultiSearcher 184 starts = new int[searchables.Length + 1]; // build starts array in MultiSearcher() 187 starts[i] = maxDoc; in MultiSearcher() 190 starts[searchables.Length] = maxDoc; in MultiSearcher() 201 return starts; in GetStarts() 229 return searchables[i].Doc(n - starts[i]); // dispatch to searcher in Doc() 245 return ReaderUtil.SubIndex(n, starts); in SubSearcher() 253 return n - starts[SubSearcher(n)]; in SubDoc() 298 i, starts); in Search() 316 int start = starts[i]; in Search() [all …]
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