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/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsalsap.c370 if (csp->starts!= NULL) MemFree (csp->starts); in CompSeqAlignFree()
371 csp->starts=NULL; in CompSeqAlignFree()
857 dsp->starts = starts; in build_seqalign_fromstart()
862 MemFree (starts); in build_seqalign_fromstart()
2076 dsp->starts = MemFree (dsp->starts); in CutAlignmentSegment()
2784 dsp->starts = MemFree (dsp->starts); in SeqAlignInsertByLoc()
2785 dsp->starts = dsp_new->starts; in SeqAlignInsertByLoc()
2940 if (laststart < *(ddp->starts) && minstart > *(ddp->starts)) { in DenseDiagToDenseSegFunc()
3341 ddp_copy->starts [j] = *starts; in DenseDiagCreate()
3400 if ( *(ddp->starts) < *(ddp_tmp->starts) ) in DenseDiagLinkSort()
[all …]
/dports/science/pnetcdf/parallel-netcdf-1.8.1/examples/F77/
H A Dfill_mode.f77 integer*8 starts(2), counts(2) variable
170 starts(1) = nx * rank + 1
171 starts(2) = 1
177 err = nfmpi_put_vara_int_all(ncid, fix_varid, starts, counts,
189 starts(2) = 1
190 err = nfmpi_fill_var_rec(ncid, rec_varid, starts(2))
195 err = nfmpi_put_vara_int_all(ncid, rec_varid, starts, counts,
200 starts(2) = 2
201 err = nfmpi_fill_var_rec(ncid, rec_varid, starts(2))
205 err = nfmpi_put_vara_int_all(ncid, rec_varid, starts, counts,
/dports/science/pnetcdf/parallel-netcdf-1.8.1/examples/F90/
H A Dfill_mode.f9081 integer(kind=MPI_OFFSET_KIND) starts(2), counts(2) variable
164 starts(1) = nx * rank + 1
165 starts(2) = 1
171 err = nf90mpi_put_var_all(ncid, fix_varid, buf, starts, counts)
182 starts(2) = 1
183 err = nf90mpi_fill_var_rec(ncid, rec_varid, starts(2))
188 err = nf90mpi_put_var_all(ncid, rec_varid, buf, starts, counts)
192 starts(2) = 2
193 err = nf90mpi_fill_var_rec(ncid, rec_varid, starts(2))
197 err = nf90mpi_put_var_all(ncid, rec_varid, buf, starts, counts)
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/mergetree/tests/
H A DAF279874_AC232323.asnt35 starts {
202 starts {
409 starts {
676 starts {
823 starts {
920 starts {
1057 starts {
1134 starts {
1261 starts {
1308 starts {
[all …]
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/
H A DLongest_orf.pm152 my (@starts, @stops, @orfs);
157 @starts = $self->identify_putative_starts($input_sequence,\@stops);
158 @orfs = $self->get_orfs (\@starts, \@stops, $input_sequence, '+');
353 my %starts;
360 $starts{0} = 1 unless $stops{0};
361 $starts{1} = 1 unless $stops{1};
362 $starts{2} = 1 unless $stops{2};
368 $starts{$start_pos} = 1;
377 $starts{$candidate_non_met_start} = 1;
381 my @starts = sort {$a<=>$b} keys %starts;
[all …]
/dports/science/py-nibabel/nibabel-3.2.1/nibabel/tests/
H A Dtest_minc2_data.py27 def _make_affine(coses, zooms, starts): argument
32 affine[:3, 3] = np.dot(R, starts)
42 starts = [117.25609125, 138.89861125, -54.442028] variable in TestEPIFrame
49 starts[::-1]),
83 starts = [105.473101260826, 151.74885125, -61.8714747993248] variable in TestB0
90 starts[::-1]),
114 starts = [-75.76775, 115.80462, 81.38605] variable in TestGado
121 starts[::-1]),
134 starts = [-90, -126, -12] variable in TestT1
141 starts[::-1]),
/dports/www/elgg/elgg-3.3.23/mod/search/classes/Elgg/Search/
H A DHighlighter.php90 $starts = [];
103 $starts[] = $start;
115 $starts[] = $start;
121 $offsets = $this->consolidateSubstrings($starts, $lengths);
129 $starts = [];
134 $starts[] = $start;
138 $offsets = $this->consolidateSubstrings($starts, $lengths);
171 $starts = array_keys($return_strs);
172 $last_pos = $starts[count($starts) - 1];
/dports/www/elgg/elgg-3.3.23/vendor/elgg/elgg/mod/search/classes/Elgg/Search/
H A DHighlighter.php90 $starts = [];
103 $starts[] = $start;
115 $starts[] = $start;
121 $offsets = $this->consolidateSubstrings($starts, $lengths);
129 $starts = [];
134 $starts[] = $start;
138 $offsets = $this->consolidateSubstrings($starts, $lengths);
171 $starts = array_keys($return_strs);
172 $last_pos = $starts[count($starts) - 1];
/dports/editors/texmacs/TeXmacs-1.99.4-src/src/Plugins/Freetype/
H A Dtt_file.cpp68 !starts (name, "ec") && in tt_locate()
69 !starts (name, "la") && in tt_locate()
70 !starts (name, "cm") && in tt_locate()
71 !starts (name, "msam") && in tt_locate()
72 !starts (name, "msbm") && in tt_locate()
73 !starts (name, "bbm") && in tt_locate()
74 !starts (name, "stmary") && in tt_locate()
75 !starts (name, "rsfs") && in tt_locate()
76 !starts (name, "grmn") && in tt_locate()
77 !starts (name, "mac-") in tt_locate()
/dports/x11/plasma5-plasma-workspace/plasma-workspace-5.23.5/startkde/plasmaautostart/
H A Dplasmaautostart.cpp82 bool starts = df->desktopGroup().exists(); in autostarts() local
85 starts = starts && !df->desktopGroup().readEntry("Hidden", false); in autostarts()
88 starts = starts && checkAllowedEnvironment(environment); in autostarts()
92 starts = starts && df->tryExec(); in autostarts()
96 starts = starts && checkStartCondition(); in autostarts()
99 return starts; in autostarts()
/dports/science/pnetcdf/parallel-netcdf-1.8.1/test/nonblocking/
H A Di_varn_indef.c188 MPI_Offset **starts[4], **counts[4]; in main() local
250 starts[i] = starts[i-1] + 6; in main()
252 starts[i][0] = starts[i-1][0] + 6 * NDIMS; in main()
257 starts[i][j] = starts[i][j-1] + NDIMS; in main()
268 starts[i][j][k] = n_starts[n][j][k]; in main()
409 permute(starts[i][0], starts[i][2]); permute(counts[i][0], counts[i][2]); in main()
410 permute(starts[i][1], starts[i][3]); permute(counts[i][1], counts[i][3]); in main()
521 permute(starts[i][0], starts[i][2]); permute(counts[i][0], counts[i][2]); in main()
522 permute(starts[i][1], starts[i][3]); permute(counts[i][1], counts[i][3]); in main()
585 free(starts[0][0]); in main()
[all …]
/dports/www/grafana8/grafana-8.3.6/vendor/github.com/ohler55/ojg/gen/
H A Dparser.go26 starts []int member
74 p.starts = p.starts[:0]
127 p.starts = p.starts[:0]
188 depth := len(p.starts)
235 if 0 < len(p.starts) && p.starts[len(p.starts)-1] == -1 {
268 if 0 < len(p.starts) && p.starts[len(p.starts)-1] == -1 {
281 p.starts = append(p.starts, -1)
309 p.starts = p.starts[0:depth]
346 p.starts = append(p.starts, len(p.stack))
361 start := p.starts[len(p.starts)-1] + 1
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/rust/gfx-backend-dx12/src/
H A Ddescriptors_cpu.rs191 starts: Vec<CpuDescriptor>, field
197 self.starts.push(start); in add()
202 self.starts.clear(); in clear()
225 if !self.src_views.starts.is_empty() { in flush()
227 self.dst_views.starts.len() as u32, in flush()
228 self.dst_views.starts.as_ptr(), in flush()
230 self.src_views.starts.len() as u32, in flush()
231 self.src_views.starts.as_ptr(), in flush()
236 if !self.src_samplers.starts.is_empty() { in flush()
239 self.dst_samplers.starts.as_ptr(), in flush()
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/dports/www/firefox-esr/firefox-91.8.0/third_party/rust/gfx-backend-dx12/src/
H A Ddescriptors_cpu.rs191 starts: Vec<CpuDescriptor>, field
197 self.starts.push(start); in add()
202 self.starts.clear(); in clear()
225 if !self.src_views.starts.is_empty() { in flush()
227 self.dst_views.starts.len() as u32, in flush()
228 self.dst_views.starts.as_ptr(), in flush()
230 self.src_views.starts.len() as u32, in flush()
231 self.src_views.starts.as_ptr(), in flush()
236 if !self.src_samplers.starts.is_empty() { in flush()
239 self.dst_samplers.starts.as_ptr(), in flush()
[all …]
/dports/textproc/clucene/clucene-core-2.3.3.4/src/core/CLucene/search/
H A DMultiSearcher.cpp41 starts = _CL_NEWARRAY(int32_t,searchablesLen + 1); // build starts array in MultiSearcher()
44 starts[i] = _maxDoc; in MultiSearcher()
47 starts[searchablesLen] = _maxDoc; in MultiSearcher()
52 _CLDELETE_ARRAY(starts); in ~MultiSearcher()
56 return starts; in getStarts()
80 return searchables[i]->doc(n - starts[i], d); // dispatch to searcher in doc()
97 midValue = starts[mid]; in subSearcher()
103 while (mid+1 < searchablesLen && starts[mid+1] == midValue) { in subSearcher()
115 return n - starts[subSearcher(n)]; in subDoc()
133 scoreDocs[j].doc += starts[i]; // convert doc in _search()
[all …]
/dports/devel/elm-format/elm-format-0.8.3/markdown/tests/Code/
H A DIndentedInLists.markdown1 - code starts here
5 code starts here
9 code starts here
13 code starts here
17 code starts here
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/unit_test/data/
H A Daligns4.asn12 starts {
38 starts {
71 starts {
112 starts {
123 starts {
134 starts {
151 starts {
165 starts {
179 starts {
199 starts {
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/dports/textproc/p5-KinoSearch1/KinoSearch1-1.01/lib/KinoSearch1/Search/
H A DMultiSearcher.pm12 starts => undef,
25 my @starts;
27 push @starts, $max_doc;
31 $self->{starts} = \@starts;
55 for ( @{ $self->{starts} } ) {
73 $doc_num -= $self->{starts}[$i];
88 my ( $searchables, $starts ) = @{$self}{qw( searchables starts )};
92 my $start = $starts->[$i];
/dports/devel/codeblocks/codeblocks-20.03/src/sdk/wxscintilla/src/scintilla/lexlib/
H A DWordList.cxx69 starts[0] = -1; in WordList()
133 std::fill(starts, starts + ELEMENTS(starts), -1); in Set()
136 starts[indexChar] = l; in Set()
149 int j = starts[firstChar]; in InList()
165 j = starts[static_cast<unsigned int>('^')]; in InList()
191 int j = starts[firstChar]; in InListAbbreviated()
217 j = starts[static_cast<unsigned int>('^')]; in InListAbbreviated()
245 int j = starts[firstChar]; in InListAbridged()
268 j = starts[static_cast<unsigned int>(marker)]; in InListAbridged()
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/optimization/
H A DBaseMultivariateMultiStartOptimizer.java53 private int starts; field in BaseMultivariateMultiStartOptimizer
72 final int starts, in BaseMultivariateMultiStartOptimizer() argument
78 if (starts < 1) { in BaseMultivariateMultiStartOptimizer()
79 throw new NotStrictlyPositiveException(starts); in BaseMultivariateMultiStartOptimizer()
83 this.starts = starts; in BaseMultivariateMultiStartOptimizer()
143 optima = new PointValuePair[starts]; in optimize()
147 for (int i = 0; i < starts; ++i) { in optimize()
/dports/databases/sqlitebrowser/sqlitebrowser-3.12.1/libs/qscintilla/src/
H A DCellBuffer.cpp90 Partitioning<POS> starts; member in LineStartIndex
101 starts.DeleteAll(); in ~LineStartIndex()
105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate()
115 starts.DeleteAll(); in Release()
135 Partitioning<POS> starts; member in LineVector
151 starts.DeleteAll(); in Init()
155 startsUTF32.starts.DeleteAll(); in Init()
215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex()
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/dports/devel/qscintilla2-qt5/QScintilla_src-2.13.0/scintilla/src/
H A DCellBuffer.cpp90 Partitioning<POS> starts; member in LineStartIndex
101 starts.DeleteAll(); in ~LineStartIndex()
105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate()
115 starts.DeleteAll(); in Release()
135 Partitioning<POS> starts; member in LineVector
151 starts.DeleteAll(); in Init()
155 startsUTF32.starts.DeleteAll(); in Init()
215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex()
[all …]
/dports/devel/qscintilla2-designerplugin-qt5/QScintilla_src-2.13.0/scintilla/src/
H A DCellBuffer.cpp90 Partitioning<POS> starts; member in LineStartIndex
101 starts.DeleteAll(); in ~LineStartIndex()
105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate()
115 starts.DeleteAll(); in Release()
135 Partitioning<POS> starts; member in LineVector
151 starts.DeleteAll(); in Init()
155 startsUTF32.starts.DeleteAll(); in Init()
215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex()
[all …]
/dports/devel/py-qt5-qscintilla2/QScintilla_src-2.13.0/scintilla/src/
H A DCellBuffer.cpp90 Partitioning<POS> starts; member in LineStartIndex
101 starts.DeleteAll(); in ~LineStartIndex()
105 Sci::Position length = starts.PositionFromPartition(starts.Partitions()); in Allocate()
115 starts.DeleteAll(); in Release()
135 Partitioning<POS> starts; member in LineVector
151 starts.DeleteAll(); in Init()
155 startsUTF32.starts.DeleteAll(); in Init()
215 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
219 assert(startsUTF16.starts.Partitions() == starts.Partitions()); in SetLineCharactersWidth()
238 assert(startsUTF32.starts.Partitions() == starts.Partitions()); in AllocateLineCharacterIndex()
[all …]
/dports/lang/mono/mono-5.10.1.57/external/api-doc-tools/external/Lucene.Net.Light/src/core/Search/
H A DMultiSearcher.cs174 private int[] starts; field in Lucene.Net.Search.MultiSearcher
184 starts = new int[searchables.Length + 1]; // build starts array in MultiSearcher()
187 starts[i] = maxDoc; in MultiSearcher()
190 starts[searchables.Length] = maxDoc; in MultiSearcher()
201 return starts; in GetStarts()
229 return searchables[i].Doc(n - starts[i]); // dispatch to searcher in Doc()
245 return ReaderUtil.SubIndex(n, starts); in SubSearcher()
253 return n - starts[SubSearcher(n)]; in SubDoc()
298 i, starts); in Search()
316 int start = starts[i]; in Search()
[all …]

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