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/dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/
H A D1_88_84__intloops_8h_source.tex9 \DoxyCodeLine{00010 \textcolor{comment}{/* CG..CG */}}
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23 \DoxyCodeLine{00024 \textcolor{comment}{/* CG..GU */}}
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H A Dio_2file__formats__msa_8h_source.tex41 \DoxyCodeLine{00149 \textcolor{keywordtype}{char} **\textcolor{keywordty…
43 \DoxyCodeLine{00151 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{in…
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55 \DoxyCodeLine{00244 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int}}
62 \DoxyCodeLine{00268 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
63 \DoxyCodeLine{00269 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
64 \DoxyCodeLine{00270 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
65 \DoxyCodeLine{00271 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
66 \DoxyCodeLine{00272 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
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H A Dcofold_8h_source.tex17 \DoxyCodeLine{00013 \textcolor{preprocessor}{\# else}}
19 \DoxyCodeLine{00015 \textcolor{preprocessor}{\# endif}}
20 \DoxyCodeLine{00016 \textcolor{preprocessor}{\#else}}
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26 \DoxyCodeLine{00042 DEPRECATED(\textcolor{keywordtype}{float}}
28 \DoxyCodeLine{00044 \textcolor{keywordtype}{char} *structure),}
31 \DoxyCodeLine{00054 DEPRECATED(\textcolor{keywordtype}{float}}
32 …eb1b793f1e4179b1eb53df1f3}{cofold\_par}}( \textcolor{keyword}{const} \textcolor{keywordtype}{char}…
69 …textcolor{keywordtype}{void} \mbox{\hyperlink{group__mfe__global__deprecated_ga4958b517c613e4d2afd…
76 \DoxyCodeLine{00179 \textcolor{preprocessor}{\#endif}}
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H A Dgquad_8h_source.tex20 \DoxyCodeLine{00030 \textcolor{keywordtype}{int} E\_gquad(\textcolor{keywordtype}{int} …
30 \DoxyCodeLine{00040 \textcolor{keywordtype}{void} E\_gquad\_ali\_en(\textcolor{keywordtype}{int} …
33 \DoxyCodeLine{00043 \textcolor{keyword}{const} \textcolor{keywordtype}{short} …
34 \DoxyCodeLine{00044 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{i…
35 \DoxyCodeLine{00045 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{i…
44 \DoxyCodeLine{00070 \textcolor{keywordtype}{int} *get\_gquad\_ali\_matrix(\textcolor{keywordtype}{u…
142 \DoxyCodeLine{00168 \textcolor{keywordtype}{int} get\_gquad\_count(\textcolor{keywordtype}{…
280 \DoxyCodeLine{00316 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{char} type;}
1002 \DoxyCodeLine{01071 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} type;}
1125 \DoxyCodeLine{01194 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} type;}
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H A D2Dpfold_8h_source.tex13 \DoxyCodeLine{00009 \textcolor{preprocessor}{\# else}}
15 \DoxyCodeLine{00011 \textcolor{preprocessor}{\# endif}}
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38 \DoxyCodeLine{00108 \textcolor{keywordtype}{char} *}
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54 …textcolor{preprocessor}{\#define TwoDpfold\_solution vrna\_sol\_TwoD\_pf\_t }\textco…
57 \DoxyCodeLine{00156 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} alloc…
81 \DoxyCodeLine{00184 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} seq\_…
156 \DoxyCodeLine{00277 \textcolor{keyword}{const} \textcolor{keywor…
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H A Dlandscape_2findpath_8h_source.tex25 \DoxyCodeLine{00056 \textcolor{keyword}{const} \textcolor{keywordtype}{ch…
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32 \DoxyCodeLine{00089 \textcolor{keyword}{const} \textcolor{keywordtype}…
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48 \DoxyCodeLine{00153 \textcolor{keyword}{const} \textcolor{keywordtype}{char} …
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58 \DoxyCodeLine{00179 \textcolor{keyword}{const} \textcolor{keywordtype}{char}…
70 \DoxyCodeLine{00216 \textcolor{keyword}{const} \textcolor{keywordtype}{char} *…
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H A Dmultibranch_8h_source.tex34 \DoxyCodeLine{00054 \textcolor{keywordtype}{int}}
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168 \DoxyCodeLine{00265 \textcolor{keywordflow}{else} \textcolor{keywordflow}{if} (si1 >= 0)}
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H A Dio_8h_source.tex23 \DoxyCodeLine{00051 \textcolor{keywordtype}{int}}
25 \DoxyCodeLine{00053 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int}…
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H A Dboltzmann__sampling_8h_source.tex21 \DoxyCodeLine{00110 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int}…
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H A Dexamples.tex64 \DoxyCodeLine{ \textcolor{keyword}{const} \textcolor{keywordtype}{char} *sequences[] = \{}
692 \DoxyCodeLine{ \textcolor{keywordflow}{if} \textcolor{keywordflow}{not} structure == \textcolor{…
693 \DoxyCodeLine{ \textcolor{keywordflow}{print} \textcolor{stringliteral}{"{}>subopt \%d"{}} \…
694 \DoxyCodeLine{ \textcolor{keywordflow}{print} \textcolor{stringliteral}{"{}\%s"{}} \% data[\…
763 \DoxyCodeLine{ \textcolor{keywordflow}{print} \textcolor{stringliteral}{"{}\%s"{}} \% s}
767 \DoxyCodeLine{ \textcolor{keywordflow}{print} \textcolor{stringliteral}{"{}\%s"{}} \% s}
790 \DoxyCodeLine{\textcolor{keywordflow}{for} s \textcolor{keywordflow}{in} s\_list:}
797 \DoxyCodeLine{\textcolor{keywordflow}{for} s \textcolor{keywordflow}{in} ss:}
804 \DoxyCodeLine{\textcolor{keywordflow}{for} s \textcolor{keywordflow}{in} ss:}
811 \DoxyCodeLine{\textcolor{keywordflow}{for} s \textcolor{keywordflow}{in} ss:}
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H A DBoyerMoore_8h_source.tex8 \DoxyCodeLine{00036 \textcolor{keyword}{const} \textcolor{keywordtype}{unsigned} \textcolor{keyword…
11 \DoxyCodeLine{00039 \textcolor{keyword}{const} \textcolor{keywordtype}{unsigned…
15 \DoxyCodeLine{00043 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{c…
18 \DoxyCodeLine{00067 \textcolor{keyword}{const} \textcolor{keywordtype}{char} *}
21 \DoxyCodeLine{00070 \textcolor{keyword}{const} \textcolor{keywordtype}{char} *ha…
23 \DoxyCodeLine{00072 \textcolor{keywordtype}{size\_t} start,}
25 \DoxyCodeLine{00074 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{char}…
28 \DoxyCodeLine{00092 \textcolor{keywordtype}{size\_t} *}
31 \DoxyCodeLine{00095 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype…
34 \DoxyCodeLine{00110 \textcolor{keywordtype}{size\_t} *}
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H A Dconcentrations_8h_source.tex13 \DoxyCodeLine{00009 \textcolor{preprocessor}{\# else}}
15 \DoxyCodeLine{00011 \textcolor{preprocessor}{\# endif}}
16 \DoxyCodeLine{00012 \textcolor{preprocessor}{\#else}}
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27 \DoxyCodeLine{00038 \textcolor{preprocessor}{\#endif}}
37 \DoxyCodeLine{00051 \textcolor{keywordtype}{double} Ac;}
38 \DoxyCodeLine{00052 \textcolor{keywordtype}{double} Bc;}
53 \DoxyCodeLine{00090 \textcolor{comment}{/*}}
57 \DoxyCodeLine{00094 \textcolor{comment}{ */}}
67 \DoxyCodeLine{00124 \textcolor{preprocessor}{\#endif}}
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H A Dfold__compound_8h_source.tex53 \DoxyCodeLine{00159 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} strands;}
100 \DoxyCodeLine{00286 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} **a2s;}
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153 \DoxyCodeLine{00477 \textcolor{keywordtype}{unsigned} \textcolor{key…
159 …e{00483 \textcolor{keyword}{const} \textcolor{keywordtype}{unsigne…
160 … \textcolor{keyword}{const} \textcolor{keywordtype}{unsigned} \textcolor{k…
161 … \textcolor{keyword}{const} \textcolor{keywordtype}{unsigned} \textcolor{k…
167 \DoxyCodeLine{00491 vrna\_fold\_compound\_TwoD(\textcolor{keyword}{const} \textcolor{keywordtype}{c…
168 \DoxyCodeLine{00492 \textcolor{keyword}{const} \textcolor{keywordtype}{char…
169 \DoxyCodeLine{00493 \textcolor{keyword}{const} \textcolor{keywordtype}{char…
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H A DLPfold_8h_source.tex21 \DoxyCodeLine{00027 \textcolor{preprocessor}{\# else}}
23 \DoxyCodeLine{00029 \textcolor{preprocessor}{\# endif}}
24 \DoxyCodeLine{00030 \textcolor{preprocessor}{\#else}}
26 \DoxyCodeLine{00032 \textcolor{preprocessor}{\#endif}}
32 \DoxyCodeLine{00051 DEPRECATED(\textcolor{keywordtype}{void} update\_pf\_paramsLP\_par(\textcolor{k…
60 \DoxyCodeLine{00122 DEPRECATED(\textcolor{keywordtype}{void} putoutpU\_prob\_par(\textcolor{keyword…
66 \DoxyCodeLine{00128 \textcolor{stringliteral}{"{}"{}});}
77 \DoxyCodeLine{00153 DEPRECATED(\textcolor{keywordtype}{void} putoutpU\_prob\_bin\_par(\textcolor{ke…
83 \DoxyCodeLine{00159 \textcolor{stringliteral}{"{}"{}});}
97 \DoxyCodeLine{00192 \textcolor{preprocessor}{\#endif}}
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H A Dparams_2basic_8h_source.tex13 \DoxyCodeLine{00009 \textcolor{preprocessor}{\# else}}
15 \DoxyCodeLine{00011 \textcolor{preprocessor}{\# endif}}
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H A Dsubopt_8h_source.tex14 \DoxyCodeLine{00010 \textcolor{preprocessor}{\# else}}
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51 \DoxyCodeLine{00123 \textcolor{keywordtype}{int} delta,}
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69 \DoxyCodeLine{00227 \textcolor{comment}{/* End of group dos */}}
89 \DoxyCodeLine{00306 \textcolor{preprocessor}{\#endif}}
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H A Dexternal_8h_source.tex23 \DoxyCodeLine{00019 \textcolor{preprocessor}{\#else}}
27 \DoxyCodeLine{00059 \textcolor{keywordtype}{int}}
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H A Dpart__func__co_8h_source.tex9 \DoxyCodeLine{00005 \textcolor{preprocessor}{\# if defined(\_\_clang\_\_)}}
13 \DoxyCodeLine{00009 \textcolor{preprocessor}{\# else}}
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27 \DoxyCodeLine{00062 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \mbox{\hyperlink{gr…
29 \DoxyCodeLine{00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \mbox{\hyperlink{gr…
33 \DoxyCodeLine{00075 \textcolor{comment}{/*}}
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80 \DoxyCodeLine{00250 \textcolor{preprocessor}{\#endif}}
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H A DRNApuzzler_8h_source.tex5 \DoxyCodeLine{00001 \textcolor{preprocessor}{\#ifndef RNAPUZZLER\_H}}
9 \DoxyCodeLine{00021 \textcolor{comment}{/*}}
11 \DoxyCodeLine{00023 \textcolor{comment}{ * drawing behavior}}
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27 \DoxyCodeLine{00039 \textcolor{keywordtype}{char} *config; \textcolor{comment}{/* file pat…
29 \DoxyCodeLine{00041 \textcolor{comment}{/* other stuff */}}
30 \DoxyCodeLine{00042 \textcolor{keyword}{const} \textcolor{keywordtype}{char} *filename;}
38 \DoxyCodeLine{00087 \textcolor{keywordtype}{int}}
46 \DoxyCodeLine{00115 \textcolor{keywordtype}{int}}
58 \DoxyCodeLine{00143 \textcolor{keywordtype}{void}}
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H A Dsoft_8h_source.tex18 …yCodeLine{00068 \textcolor{keywordtype}{unsigned} \textcolor…
43 \DoxyCodeLine{00160 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} interval\_star…
44 \DoxyCodeLine{00161 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} interval\_end;}
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H A Dpart__func__window_8h_source.tex14 …eLine{00067 \textcolor{keywordtype}{unsigned} \textcolor…
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45 \DoxyCodeLine{00210 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int…
49 \DoxyCodeLine{00214 \textcolor{comment}{/* End basic interface */}}
54 \DoxyCodeLine{00247 \textcolor{keywordtype}{float} cutoff);}
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72 \DoxyCodeLine{00332 \textcolor{keywordtype}{int}}
81 \DoxyCodeLine{00341 \textcolor{comment}{/* End simplified interface */}}
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H A Dunstructured__domains_8h_source.tex66 \DoxyCodeLine{00229 \textcolor{comment}{/*}}
70 \DoxyCodeLine{00233 \textcolor{comment}{ */}}
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/dports/devel/pear-PhpDocumentor/PhpDocumentor-1.4.4/phpDocumentor/Converters/PDF/default/templates/default/
H A Doptions.ini9 /T_FUNCTION = </c:textcolor></b>
11 /T_CLONE = </c:textcolor></b>
29 /T_IF = </c:textcolor></b>
33 /T_FOR = </c:textcolor></b>
37 /T_DO = </c:textcolor></b>
43 /T_VAR = </c:textcolor></b>
51 /T_NEW = </c:textcolor></b>
69 /T_AS = </c:textcolor></b>
105 /coretag = </c:textcolor>
107 /tag = </c:textcolor>
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/dports/science/tfel/tfel-3.4.0/docs/mfront/mfront/
H A DTestGetEvol.tex2 \textcolor{blue}{'OPTION'}\hspace*{1em}\textcolor{blue}{'DIME'}\hspace*{1em}\textcolor{green}{3};\\
3 \textcolor{blue}{'OPTION'}\hspace*{1em}\textcolor{blue}{'ELEM'}\hspace*{1em}\textcolor{blue}{'QUA4'…
5 TLoi\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'TABLE'};\\
6 TLoi\textcolor{green}{.}\textcolor{blue}{'LIBRAIRIE'}\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'l…
7 TLoi\textcolor{green}{.}\textcolor{blue}{'MODELE'}\hspace*{1em}\hspace*{1em}\hspace*{1em}\hspace*{1…
8 …textcolor{green}{.}\textcolor{blue}{'VARIABLES'}\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'MOTS'…
10 val\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'TABLE'};\\
11 val\textcolor{green}{.}\textcolor{blue}{'PORO'}\hspace*{1em}=\hspace*{1em}\textcolor{green}{0.1};\\
13 …ce*{1em}\textcolor{green}{300.}\hspace*{1em}\textcolor{green}{1500.}\hspace*{1em}\textcolor{green}…
14 \textcolor{blue}{'DESSIN'}\hspace*{1em}ev;
/dports/science/tfel-edf/tfel-3.2.1/docs/mfront/mfront/
H A DTestGetEvol.tex2 \textcolor{blue}{'OPTION'}\hspace*{1em}\textcolor{blue}{'DIME'}\hspace*{1em}\textcolor{green}{3};\\
3 \textcolor{blue}{'OPTION'}\hspace*{1em}\textcolor{blue}{'ELEM'}\hspace*{1em}\textcolor{blue}{'QUA4'…
5 TLoi\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'TABLE'};\\
6 TLoi\textcolor{green}{.}\textcolor{blue}{'LIBRAIRIE'}\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'l…
7 TLoi\textcolor{green}{.}\textcolor{blue}{'MODELE'}\hspace*{1em}\hspace*{1em}\hspace*{1em}\hspace*{1…
8 …textcolor{green}{.}\textcolor{blue}{'VARIABLES'}\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'MOTS'…
10 val\hspace*{1em}=\hspace*{1em}\textcolor{blue}{'TABLE'};\\
11 val\textcolor{green}{.}\textcolor{blue}{'PORO'}\hspace*{1em}=\hspace*{1em}\textcolor{green}{0.1};\\
13 …ce*{1em}\textcolor{green}{300.}\hspace*{1em}\textcolor{green}{1500.}\hspace*{1em}\textcolor{green}…
14 \textcolor{blue}{'DESSIN'}\hspace*{1em}ev;

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