Home
last modified time | relevance | path

Searched refs:wants_full (Results 26 – 41 of 41) sorted by relevance

12

/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/dispatch/
H A DReadCollectionItf.cpp356 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReads() local
359 …NGS_Read_v1 * ret = ( * vt -> get_reads ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReads()
379 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadCount() local
382 …uint64_t ret = ( * vt -> get_read_count ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReadCount()
422 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadRange() local
425 …NGS_Read_v1 * ret = ( * vt -> get_read_range ) ( self, & err, first, count, wants_full, wants_par… in getReadRange()
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/dispatch/
H A DReadCollectionItf.cpp356 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReads() local
359 …NGS_Read_v1 * ret = ( * vt -> get_reads ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReads()
379 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadCount() local
382 …uint64_t ret = ( * vt -> get_read_count ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReadCount()
422 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadRange() local
425 …NGS_Read_v1 * ret = ( * vt -> get_read_range ) ( self, & err, first, count, wants_full, wants_par… in getReadRange()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DNGS_ReadGroup.h85 struct NGS_Read* NGS_ReadGroupGetReads ( const NGS_ReadGroup * self, ctx_t ctx, bool wants_full, bo…
113 … ( * get_reads ) ( const NGS_READGROUP * self, ctx_t ctx, bool wants_full, bool wants_part…
H A DCSRA1_ReadCollection.c449 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReads() argument
455 …TRY ( NGS_Read * ref = CSRA1_ReadIteratorMake ( ctx, curs, self -> run_name, wants_full, wants_par… in CSRA1_ReadCollectionGetReads()
502 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() argument
514 if ( wants_full && wants_partial && wants_unaligned ) in CSRA1_ReadCollectionGetReadCount()
561 if ( wants_full ) in CSRA1_ReadCollectionGetReadCount()
578 bool wants_full, in CSRA1_ReadCollectionGetReadRange() argument
586 …RA1_ReadIteratorMakeRange ( ctx, curs, self -> run_name, first, count, wants_full, wants_partial, … in CSRA1_ReadCollectionGetReadRange()
H A DNGS_ReadGroup.c164 bool wants_full, bool wants_partial, bool wants_unaligned ) in NGS_ReadGroupGetReads() argument
173 return VT ( self, get_reads ) ( self, ctx, wants_full, wants_partial, wants_unaligned ); in NGS_ReadGroupGetReads()
H A DSRA_ReadGroup.c78 … SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bool wants_part…
159 struct NGS_Read* SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadGroupGetReads() argument
183 wants_full, in SRA_ReadGroupGetReads()
H A DSRA_DB_ReadCollection.c238 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReads() argument
293 …CollectionGetReadCount ( SRA_DB_ReadCollection * self, ctx_t ctx, bool wants_full, bool wants_part… in SRA_DB_ReadCollectionGetReadCount() argument
310 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReadRange() argument
H A DSRA_ReadCollection.c228 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReads() argument
283 uint64_t SRA_ReadCollectionGetReadCount ( SRA_ReadCollection * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadCollectionGetReadCount() argument
300 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReadRange() argument
H A DBAM_ReadCollection.c502 …eadCollectionReads(NGS_ReadCollection *const vp, ctx_t ctx, bool const wants_full, bool const want… in BAM_ReadCollectionReads() argument
523 … vp, ctx_t ctx, uint64_t const first, uint64_t const count, bool const wants_full, bool const want… in BAM_ReadCollectionReadRange() argument
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DNGS_ReadGroup.h85 struct NGS_Read* NGS_ReadGroupGetReads ( const NGS_ReadGroup * self, ctx_t ctx, bool wants_full, bo…
113 … ( * get_reads ) ( const NGS_READGROUP * self, ctx_t ctx, bool wants_full, bool wants_part…
H A DCSRA1_ReadCollection.c449 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReads() argument
455 …TRY ( NGS_Read * ref = CSRA1_ReadIteratorMake ( ctx, curs, self -> run_name, wants_full, wants_par… in CSRA1_ReadCollectionGetReads()
502 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() argument
514 if ( wants_full && wants_partial && wants_unaligned ) in CSRA1_ReadCollectionGetReadCount()
561 if ( wants_full ) in CSRA1_ReadCollectionGetReadCount()
578 bool wants_full, in CSRA1_ReadCollectionGetReadRange() argument
586 …RA1_ReadIteratorMakeRange ( ctx, curs, self -> run_name, first, count, wants_full, wants_partial, … in CSRA1_ReadCollectionGetReadRange()
H A DNGS_ReadGroup.c164 bool wants_full, bool wants_partial, bool wants_unaligned ) in NGS_ReadGroupGetReads() argument
173 return VT ( self, get_reads ) ( self, ctx, wants_full, wants_partial, wants_unaligned ); in NGS_ReadGroupGetReads()
H A DSRA_ReadGroup.c78 … SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bool wants_part…
159 struct NGS_Read* SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadGroupGetReads() argument
183 wants_full, in SRA_ReadGroupGetReads()
H A DSRA_DB_ReadCollection.c238 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReads() argument
293 …CollectionGetReadCount ( SRA_DB_ReadCollection * self, ctx_t ctx, bool wants_full, bool wants_part… in SRA_DB_ReadCollectionGetReadCount() argument
310 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReadRange() argument
H A DSRA_ReadCollection.c228 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReads() argument
283 uint64_t SRA_ReadCollectionGetReadCount ( SRA_ReadCollection * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadCollectionGetReadCount() argument
300 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReadRange() argument
H A DBAM_ReadCollection.c502 …eadCollectionReads(NGS_ReadCollection *const vp, ctx_t ctx, bool const wants_full, bool const want… in BAM_ReadCollectionReads() argument
523 … vp, ctx_t ctx, uint64_t const first, uint64_t const count, bool const wants_full, bool const want… in BAM_ReadCollectionReadRange() argument

12