/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/dispatch/ |
H A D | ReadCollectionItf.cpp | 356 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReads() local 359 …NGS_Read_v1 * ret = ( * vt -> get_reads ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReads() 379 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadCount() local 382 …uint64_t ret = ( * vt -> get_read_count ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReadCount() 422 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadRange() local 425 …NGS_Read_v1 * ret = ( * vt -> get_read_range ) ( self, & err, first, count, wants_full, wants_par… in getReadRange()
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/dispatch/ |
H A D | ReadCollectionItf.cpp | 356 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReads() local 359 …NGS_Read_v1 * ret = ( * vt -> get_reads ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReads() 379 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadCount() local 382 …uint64_t ret = ( * vt -> get_read_count ) ( self, & err, wants_full, wants_partial, wants_unalign… in getReadCount() 422 bool wants_full = ( categories & Read :: fullyAligned ) != 0; in getReadRange() local 425 …NGS_Read_v1 * ret = ( * vt -> get_read_range ) ( self, & err, first, count, wants_full, wants_par… in getReadRange()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
H A D | NGS_ReadGroup.h | 85 struct NGS_Read* NGS_ReadGroupGetReads ( const NGS_ReadGroup * self, ctx_t ctx, bool wants_full, bo… 113 … ( * get_reads ) ( const NGS_READGROUP * self, ctx_t ctx, bool wants_full, bool wants_part…
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H A D | CSRA1_ReadCollection.c | 449 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReads() argument 455 …TRY ( NGS_Read * ref = CSRA1_ReadIteratorMake ( ctx, curs, self -> run_name, wants_full, wants_par… in CSRA1_ReadCollectionGetReads() 502 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() argument 514 if ( wants_full && wants_partial && wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() 561 if ( wants_full ) in CSRA1_ReadCollectionGetReadCount() 578 bool wants_full, in CSRA1_ReadCollectionGetReadRange() argument 586 …RA1_ReadIteratorMakeRange ( ctx, curs, self -> run_name, first, count, wants_full, wants_partial, … in CSRA1_ReadCollectionGetReadRange()
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H A D | NGS_ReadGroup.c | 164 bool wants_full, bool wants_partial, bool wants_unaligned ) in NGS_ReadGroupGetReads() argument 173 return VT ( self, get_reads ) ( self, ctx, wants_full, wants_partial, wants_unaligned ); in NGS_ReadGroupGetReads()
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H A D | SRA_ReadGroup.c | 78 … SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bool wants_part… 159 struct NGS_Read* SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadGroupGetReads() argument 183 wants_full, in SRA_ReadGroupGetReads()
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H A D | SRA_DB_ReadCollection.c | 238 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReads() argument 293 …CollectionGetReadCount ( SRA_DB_ReadCollection * self, ctx_t ctx, bool wants_full, bool wants_part… in SRA_DB_ReadCollectionGetReadCount() argument 310 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReadRange() argument
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H A D | SRA_ReadCollection.c | 228 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReads() argument 283 uint64_t SRA_ReadCollectionGetReadCount ( SRA_ReadCollection * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadCollectionGetReadCount() argument 300 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReadRange() argument
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H A D | BAM_ReadCollection.c | 502 …eadCollectionReads(NGS_ReadCollection *const vp, ctx_t ctx, bool const wants_full, bool const want… in BAM_ReadCollectionReads() argument 523 … vp, ctx_t ctx, uint64_t const first, uint64_t const count, bool const wants_full, bool const want… in BAM_ReadCollectionReadRange() argument
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
H A D | NGS_ReadGroup.h | 85 struct NGS_Read* NGS_ReadGroupGetReads ( const NGS_ReadGroup * self, ctx_t ctx, bool wants_full, bo… 113 … ( * get_reads ) ( const NGS_READGROUP * self, ctx_t ctx, bool wants_full, bool wants_part…
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H A D | CSRA1_ReadCollection.c | 449 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReads() argument 455 …TRY ( NGS_Read * ref = CSRA1_ReadIteratorMake ( ctx, curs, self -> run_name, wants_full, wants_par… in CSRA1_ReadCollectionGetReads() 502 bool wants_full, bool wants_partial, bool wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() argument 514 if ( wants_full && wants_partial && wants_unaligned ) in CSRA1_ReadCollectionGetReadCount() 561 if ( wants_full ) in CSRA1_ReadCollectionGetReadCount() 578 bool wants_full, in CSRA1_ReadCollectionGetReadRange() argument 586 …RA1_ReadIteratorMakeRange ( ctx, curs, self -> run_name, first, count, wants_full, wants_partial, … in CSRA1_ReadCollectionGetReadRange()
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H A D | NGS_ReadGroup.c | 164 bool wants_full, bool wants_partial, bool wants_unaligned ) in NGS_ReadGroupGetReads() argument 173 return VT ( self, get_reads ) ( self, ctx, wants_full, wants_partial, wants_unaligned ); in NGS_ReadGroupGetReads()
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H A D | SRA_ReadGroup.c | 78 … SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bool wants_part… 159 struct NGS_Read* SRA_ReadGroupGetReads ( const SRA_ReadGroup * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadGroupGetReads() argument 183 wants_full, in SRA_ReadGroupGetReads()
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H A D | SRA_DB_ReadCollection.c | 238 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReads() argument 293 …CollectionGetReadCount ( SRA_DB_ReadCollection * self, ctx_t ctx, bool wants_full, bool wants_part… in SRA_DB_ReadCollectionGetReadCount() argument 310 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_DB_ReadCollectionGetReadRange() argument
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H A D | SRA_ReadCollection.c | 228 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReads() argument 283 uint64_t SRA_ReadCollectionGetReadCount ( SRA_ReadCollection * self, ctx_t ctx, bool wants_full, bo… in SRA_ReadCollectionGetReadCount() argument 300 bool wants_full, bool wants_partial, bool wants_unaligned ) in SRA_ReadCollectionGetReadRange() argument
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H A D | BAM_ReadCollection.c | 502 …eadCollectionReads(NGS_ReadCollection *const vp, ctx_t ctx, bool const wants_full, bool const want… in BAM_ReadCollectionReads() argument 523 … vp, ctx_t ctx, uint64_t const first, uint64_t const count, bool const wants_full, bool const want… in BAM_ReadCollectionReadRange() argument
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