1#!/usr/bin/env tcsh 2 3# created by uber_subject.py: version 0.37 (April 14, 2015) 4# creation date: Thu Sep 10 14:27:59 2015 5 6set top_dir = ~/AFNI_data6/FT_analysis/FT 7 8# set subject and group identifiers 9set subj = FT 10set group_id = horses 11 12# run afni_proc.py to create a single subject processing script 13afni_proc.py -subj_id $subj \ 14 -write_3dD_script proc.3dd.ppi.pre \ 15 -write_3dD_prefix ppi.pre. \ 16 -script proc.$subj -scr_overwrite \ 17 -blocks tshift align tlrc volreg blur mask scale regress \ 18 -copy_anat $top_dir/FT_anat+orig \ 19 -tcat_remove_first_trs 2 \ 20 -dsets \ 21 $top_dir/FT_epi_r1+orig.HEAD \ 22 $top_dir/FT_epi_r2+orig.HEAD \ 23 $top_dir/FT_epi_r3+orig.HEAD \ 24 -volreg_align_to third \ 25 -volreg_align_e2a \ 26 -volreg_tlrc_warp \ 27 -blur_size 4.0 \ 28 -regress_stim_times \ 29 $top_dir/AV1_vis.txt \ 30 $top_dir/AV2_aud.txt \ 31 -regress_stim_labels \ 32 vis aud \ 33 -regress_basis 'BLOCK(20,1)' \ 34 # -regress_censor_motion 0.3 \ 35 -regress_opts_3dD \ 36 -jobs 5 \ 37 -gltsym 'SYM: vis -aud' -glt_label 1 V-A \ 38 -gltsym 'SYM: 0.5*vis +0.5*aud' -glt_label 2 mean.VA \ 39 -regress_compute_fitts \ 40 -regress_make_ideal_sum sum_ideal.1D \ 41 -regress_est_blur_epits \ 42 -regress_est_blur_errts \ 43 -regress_run_clustsim no 44 45