/dports/biology/infernal/infernal-1.1.3/rmark/ |
H A D | x-blastall | 30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou… 35 $blastall = "$execdir/blastall"; 36 $afetch = "$execdir/esl-afetch"; 37 $sfetch = "$execdir/esl-sfetch"; 38 $reformat = "$execdir/esl-reformat"; 40 $afetch = "$execdir/../easel/miniapps/esl-afetch"; 41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; } 44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } 48 $reformat = "$execdir/../easel/miniapps/esl-reformat"; [all …]
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H A D | x-blastn | 30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou… 35 $blastn = "$execdir/blastn"; 36 $afetch = "$execdir/esl-afetch"; 37 $sfetch = "$execdir/esl-sfetch"; 38 $reformat = "$execdir/esl-reformat"; 40 $afetch = "$execdir/../easel/miniapps/esl-afetch"; 41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; } 44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } 48 $reformat = "$execdir/../easel/miniapps/esl-reformat"; [all …]
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H A D | x-wublast | 30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou… 35 $blastn = "$execdir/blastn"; 36 $afetch = "$execdir/esl-afetch"; 37 $sfetch = "$execdir/esl-sfetch"; 38 $reformat = "$execdir/esl-reformat"; 40 $afetch = "$execdir/../easel/miniapps/esl-afetch"; 41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; } 44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } 48 $reformat = "$execdir/../easel/miniapps/esl-reformat"; [all …]
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H A D | x-nhmmer2cmsearch | 47 $nhmmer = "$execdir/nhmmer"; 48 $cmsearch = "$execdir/cmsearch"; 49 $cmfetch = "$execdir/cmfetch"; 50 $hmmfetch = "$execdir/hmmfetch"; 51 $cmstat = "$execdir/cmstat"; 52 $sfetch = "$execdir/esl-sfetch"; 53 $seqstat = "$execdir/esl-seqstat"; 55 if (! -d $execdir) { die "didn't find executable directory $ex… 70 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 71 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } [all …]
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H A D | x-cmsearch | 71 $cmsearch = "$execdir/cmsearch"; 72 $cmbuild = "$execdir/cmbuild"; 73 $afetch = "$execdir/esl-afetch"; 74 $sfetch = "$execdir/esl-sfetch"; 75 $cmfetch = "$execdir/cmfetch"; 76 $hmmfetch = "$execdir/hmmfetch"; 79 $afetch = "$execdir/../easel/miniapps/esl-afetch"; 80 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; } 84 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 85 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } [all …]
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H A D | x-nhmmer | 34 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou… 39 $nhmmer = "$execdir/nhmmer"; 40 $hmmfetch = "$execdir/hmmfetch"; 41 $sfetch = "$execdir/esl-sfetch"; 44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch"; 45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; } 53 if (! -d $execdir) { die "didn't find executable directory $ex…
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/dports/science/netcdf/netcdf-c-4.7.4/nc_perf/ |
H A D | run_bm_elena.sh | 18 ${execdir}/bm_file -h -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:16:256 tst_elena_int_3D.nc 19 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:256:256 tst_elena_int_3D.nc 20 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:64:256 tst_elena_int_3D.nc 21 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:256:256 tst_elena_int_3D.nc 22 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:64:256 tst_elena_int_3D.nc 23 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:256:256 tst_elena_int_3D.nc 28 ${execdir}/tst_files2
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/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/examples/C/ |
H A D | run_examples.sh | 12 ${execdir}/simple_xy_wr 13 ${execdir}/simple_xy_rd 16 ${execdir}/sfc_pres_temp_wr 17 ${execdir}/sfc_pres_temp_rd 20 ${execdir}/pres_temp_4D_wr 21 ${execdir}/pres_temp_4D_rd
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/dports/science/netcdf/netcdf-c-4.7.4/examples/C/ |
H A D | run_examples.sh | 18 ${execdir}/simple_xy_wr 19 ${execdir}/simple_xy_rd 22 ${execdir}/sfc_pres_temp_wr 23 ${execdir}/sfc_pres_temp_rd 26 ${execdir}/pres_temp_4D_wr 27 ${execdir}/pres_temp_4D_rd
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/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/nc_test4/ |
H A D | run_bm_elena.sh | 15 ${execdir}/bm_file -h -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:16:256 tst_elena_int_3D.nc 16 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:256:256 tst_elena_int_3D.nc 17 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:64:256 tst_elena_int_3D.nc 18 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:256:256 tst_elena_int_3D.nc 19 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:64:256 tst_elena_int_3D.nc 20 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:256:256 tst_elena_int_3D.nc
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/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/ncdump/ |
H A D | tst_netcdf4.sh | 41 ${execdir}/tst_h_rdc0 ; ERR 44 ${execdir}/tst_create_files ; ERR 52 ${execdir}/tst_group_data ; ERR 65 ${execdir}/tst_enum_data ; ERR 70 ${execdir}/tst_opaque_data ; ERR 76 ${execdir}/tst_vlen_data ; ERR 82 ${execdir}/tst_comp ; ERR 87 ${execdir}/tst_nans ; ERR 94 ${execdir}/tst_unicode ; ERR 101 ${execdir}/tst_special_atts ; ERR
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H A D | tst_lengths.sh | 73 ${NCGEN} -b ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 79 ${NCGEN} -b -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 97 ${NCGEN} -b -k64-bit-offset ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 103 ${NCGEN} -b -k64-bit-offset -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 129 ${NCGEN} -b -5 ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 133 if test `${execdir}/nctrunc <small.nc |wc -c` != 104; then 138 ${NCGEN} -b -5 -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
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/dports/science/netcdf/netcdf-c-4.7.4/ncdump/ |
H A D | tst_netcdf4.sh | 41 ${execdir}/tst_h_rdc0 ; ERR 44 ${execdir}/tst_create_files ; ERR 52 ${execdir}/tst_group_data ; ERR 65 ${execdir}/tst_enum_data ; ERR 70 ${execdir}/tst_opaque_data ; ERR 76 ${execdir}/tst_vlen_data ; ERR 82 ${execdir}/tst_comp ; ERR 87 ${execdir}/tst_nans ; ERR 94 ${execdir}/tst_unicode ; ERR 101 ${execdir}/tst_special_atts ; ERR
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H A D | tst_lengths.sh | 73 ${NCGEN} -b ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 79 ${NCGEN} -b -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 97 ${NCGEN} -b -k64-bit-offset ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 103 ${NCGEN} -b -k64-bit-offset -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 129 ${NCGEN} -b -5 ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t 133 if test `${execdir}/nctrunc <small.nc |wc -c` != 104; then 138 ${NCGEN} -b -5 -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
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/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/nc_test/ |
H A D | run_diskless.sh | 23 ${execdir}/tst_diskless 29 ${execdir}/tst_diskless netcdf4 36 ${execdir}/tst_diskless persist 50 ${execdir}/tst_diskless netcdf4 persist 69 ${execdir}/tst_diskless2 104 ${execdir}/tst_diskless3 file 110 ${execdir}/tst_diskless3 diskless persist
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/dports/science/netcdf/netcdf-c-4.7.4/nc_test/ |
H A D | run_diskless.sh | 23 ${execdir}/tst_diskless 29 ${execdir}/tst_diskless netcdf4 36 ${execdir}/tst_diskless persist 50 ${execdir}/tst_diskless netcdf4 persist 69 ${execdir}/tst_diskless2 105 ${execdir}/tst_diskless3 file file:$FILE3 111 ${execdir}/tst_diskless3 diskless persist file:$FILE3
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/dports/archivers/par2cmdline/par2cmdline-0.8.1/tests/ |
H A D | test2 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test17 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test15 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test1 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test25 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test26 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test12 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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H A D | test16 | 8 execdir="$PWD" 14 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 15 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 17 PARBINARY="wine $execdir/par2.exe" 19 PARBINARY="$execdir/par2"
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H A D | test10 | 3 execdir="$PWD" 9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2" 10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ] 12 PARBINARY="wine $execdir/par2.exe" 14 PARBINARY="$execdir/par2"
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