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/dports/biology/infernal/infernal-1.1.3/rmark/
H A Dx-blastall30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
35 $blastall = "$execdir/blastall";
36 $afetch = "$execdir/esl-afetch";
37 $sfetch = "$execdir/esl-sfetch";
38 $reformat = "$execdir/esl-reformat";
40 $afetch = "$execdir/../easel/miniapps/esl-afetch";
41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; }
44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
48 $reformat = "$execdir/../easel/miniapps/esl-reformat";
[all …]
H A Dx-blastn30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
35 $blastn = "$execdir/blastn";
36 $afetch = "$execdir/esl-afetch";
37 $sfetch = "$execdir/esl-sfetch";
38 $reformat = "$execdir/esl-reformat";
40 $afetch = "$execdir/../easel/miniapps/esl-afetch";
41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; }
44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
48 $reformat = "$execdir/../easel/miniapps/esl-reformat";
[all …]
H A Dx-wublast30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
35 $blastn = "$execdir/blastn";
36 $afetch = "$execdir/esl-afetch";
37 $sfetch = "$execdir/esl-sfetch";
38 $reformat = "$execdir/esl-reformat";
40 $afetch = "$execdir/../easel/miniapps/esl-afetch";
41 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; }
44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
48 $reformat = "$execdir/../easel/miniapps/esl-reformat";
[all …]
H A Dx-nhmmer2cmsearch47 $nhmmer = "$execdir/nhmmer";
48 $cmsearch = "$execdir/cmsearch";
49 $cmfetch = "$execdir/cmfetch";
50 $hmmfetch = "$execdir/hmmfetch";
51 $cmstat = "$execdir/cmstat";
52 $sfetch = "$execdir/esl-sfetch";
53 $seqstat = "$execdir/esl-seqstat";
55 if (! -d $execdir) { die "didn't find executable directory $ex…
70 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
71 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
[all …]
H A Dx-cmsearch71 $cmsearch = "$execdir/cmsearch";
72 $cmbuild = "$execdir/cmbuild";
73 $afetch = "$execdir/esl-afetch";
74 $sfetch = "$execdir/esl-sfetch";
75 $cmfetch = "$execdir/cmfetch";
76 $hmmfetch = "$execdir/hmmfetch";
79 $afetch = "$execdir/../easel/miniapps/esl-afetch";
80 if(! -e $afetch) { die "$afetch does not exist, nor $execdir/$afetch"; }
84 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
85 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
[all …]
H A Dx-nhmmer34 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
39 $nhmmer = "$execdir/nhmmer";
40 $hmmfetch = "$execdir/hmmfetch";
41 $sfetch = "$execdir/esl-sfetch";
44 $sfetch = "$execdir/../easel/miniapps/esl-sfetch";
45 if(! -e $sfetch) { die "$sfetch does not exist, nor $execdir/$sfetch"; }
53 if (! -d $execdir) { die "didn't find executable directory $ex…
/dports/science/netcdf/netcdf-c-4.7.4/nc_perf/
H A Drun_bm_elena.sh18 ${execdir}/bm_file -h -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:16:256 tst_elena_int_3D.nc
19 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:256:256 tst_elena_int_3D.nc
20 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:64:256 tst_elena_int_3D.nc
21 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:256:256 tst_elena_int_3D.nc
22 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:64:256 tst_elena_int_3D.nc
23 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:256:256 tst_elena_int_3D.nc
28 ${execdir}/tst_files2
/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/examples/C/
H A Drun_examples.sh12 ${execdir}/simple_xy_wr
13 ${execdir}/simple_xy_rd
16 ${execdir}/sfc_pres_temp_wr
17 ${execdir}/sfc_pres_temp_rd
20 ${execdir}/pres_temp_4D_wr
21 ${execdir}/pres_temp_4D_rd
/dports/science/netcdf/netcdf-c-4.7.4/examples/C/
H A Drun_examples.sh18 ${execdir}/simple_xy_wr
19 ${execdir}/simple_xy_rd
22 ${execdir}/sfc_pres_temp_wr
23 ${execdir}/sfc_pres_temp_rd
26 ${execdir}/pres_temp_4D_wr
27 ${execdir}/pres_temp_4D_rd
/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/nc_test4/
H A Drun_bm_elena.sh15 ${execdir}/bm_file -h -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:16:256 tst_elena_int_3D.nc
16 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:1024:256:256 tst_elena_int_3D.nc
17 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:64:256 tst_elena_int_3D.nc
18 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:512:256:256 tst_elena_int_3D.nc
19 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:64:256 tst_elena_int_3D.nc
20 ${execdir}/bm_file -d -f 3 -o tst_elena_out.nc -c 0:-1:0:256:256:256 tst_elena_int_3D.nc
/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/ncdump/
H A Dtst_netcdf4.sh41 ${execdir}/tst_h_rdc0 ; ERR
44 ${execdir}/tst_create_files ; ERR
52 ${execdir}/tst_group_data ; ERR
65 ${execdir}/tst_enum_data ; ERR
70 ${execdir}/tst_opaque_data ; ERR
76 ${execdir}/tst_vlen_data ; ERR
82 ${execdir}/tst_comp ; ERR
87 ${execdir}/tst_nans ; ERR
94 ${execdir}/tst_unicode ; ERR
101 ${execdir}/tst_special_atts ; ERR
H A Dtst_lengths.sh73 ${NCGEN} -b ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
79 ${NCGEN} -b -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
97 ${NCGEN} -b -k64-bit-offset ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
103 ${NCGEN} -b -k64-bit-offset -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
129 ${NCGEN} -b -5 ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
133 if test `${execdir}/nctrunc <small.nc |wc -c` != 104; then
138 ${NCGEN} -b -5 -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
/dports/science/netcdf/netcdf-c-4.7.4/ncdump/
H A Dtst_netcdf4.sh41 ${execdir}/tst_h_rdc0 ; ERR
44 ${execdir}/tst_create_files ; ERR
52 ${execdir}/tst_group_data ; ERR
65 ${execdir}/tst_enum_data ; ERR
70 ${execdir}/tst_opaque_data ; ERR
76 ${execdir}/tst_vlen_data ; ERR
82 ${execdir}/tst_comp ; ERR
87 ${execdir}/tst_nans ; ERR
94 ${execdir}/tst_unicode ; ERR
101 ${execdir}/tst_special_atts ; ERR
H A Dtst_lengths.sh73 ${NCGEN} -b ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
79 ${NCGEN} -b -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
97 ${NCGEN} -b -k64-bit-offset ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
103 ${NCGEN} -b -k64-bit-offset -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
129 ${NCGEN} -b -5 ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
133 if test `${execdir}/nctrunc <small.nc |wc -c` != 104; then
138 ${NCGEN} -b -5 -x ${srcdir}/small.cdl && ${execdir}/rewrite-scalar small.nc t
/dports/math/libmesh/libmesh-1.6.2/contrib/netcdf/netcdf-c-4.6.2/nc_test/
H A Drun_diskless.sh23 ${execdir}/tst_diskless
29 ${execdir}/tst_diskless netcdf4
36 ${execdir}/tst_diskless persist
50 ${execdir}/tst_diskless netcdf4 persist
69 ${execdir}/tst_diskless2
104 ${execdir}/tst_diskless3 file
110 ${execdir}/tst_diskless3 diskless persist
/dports/science/netcdf/netcdf-c-4.7.4/nc_test/
H A Drun_diskless.sh23 ${execdir}/tst_diskless
29 ${execdir}/tst_diskless netcdf4
36 ${execdir}/tst_diskless persist
50 ${execdir}/tst_diskless netcdf4 persist
69 ${execdir}/tst_diskless2
105 ${execdir}/tst_diskless3 file file:$FILE3
111 ${execdir}/tst_diskless3 diskless persist file:$FILE3
/dports/archivers/par2cmdline/par2cmdline-0.8.1/tests/
H A Dtest23 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest173 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest153 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest13 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest253 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest263 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest123 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"
H A Dtest168 execdir="$PWD"
14 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
15 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
17 PARBINARY="wine $execdir/par2.exe"
19 PARBINARY="$execdir/par2"
H A Dtest103 execdir="$PWD"
9 PARBINARY="valgrind $PARVALGRINDOPTS $execdir/par2"
10 elif [ `which wine` != "" ] && [ -f "$execdir/par2.exe" ]
12 PARBINARY="wine $execdir/par2.exe"
14 PARBINARY="$execdir/par2"

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