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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c4108 && (fabs(part[ABvsCD]-part[ACvsBD]) > 0.001 || fabs(part[ABvsCD]-part[ADvsBC]) > 0.001)) in QuartetConstraintPenalties()
4784 criteria[ABvsCD] = d[qAB] + d[qCD] + penalty[ABvsCD]; in ChooseNNI()
4788 nni_t choice = ABvsCD; in ChooseNNI()
5621 if (penalty[ABvsCD] > penalty[ACvsBD] || penalty[ABvsCD] > penalty[ADvsBC]) in MLQuartetNNI()
5655 return(ABvsCD); in MLQuartetNNI()
5712 return(ABvsCD); in MLQuartetNNI()
6383 nni_t choice = ABvsCD; in NNI()
6466 if (choice == ABvsCD) { in NNI()
6503 if (choice == ABvsCD) { in NNI()
7200 if (loglk[ABvsCD] >= loglk[ACvsBD] && loglk[ABvsCD] >= loglk[ADvsBC]) in TestSplitsML()
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