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Searched refs:ACTOR_ID (Results 1 – 25 of 218) sorted by relevance

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/dports/biology/ugene/ugene-40.1/src/plugins/weight_matrix/src/
H A DWeightMatrixIOWorkers.cpp52 const QString PWMatrixReader::ACTOR_ID("wmatrix-read"); member in U2::LocalWorkflow::PWMatrixReader
53 const QString PWMatrixWriter::ACTOR_ID("wmatrix-write"); member in U2::LocalWorkflow::PWMatrixWriter
54 const QString PFMatrixReader::ACTOR_ID("fmatrix-read"); member in U2::LocalWorkflow::PFMatrixReader
55 const QString PFMatrixWriter::ACTOR_ID("fmatrix-write"); member in U2::LocalWorkflow::PFMatrixWriter
181 if (PWMatrixReader::ACTOR_ID == a->getProto()->getId()) { in createWorker()
183 } else if (PWMatrixWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker()
185 } else if (PWMatrixBuildWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker()
187 } else if (PWMatrixSearchWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker()
403 if (PFMatrixReader::ACTOR_ID == a->getProto()->getId()) { in createWorker()
405 } else if (PFMatrixWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker()
[all …]
H A DWeightMatrixWorkers.h71 static const QString ACTOR_ID;
93 static const QString ACTOR_ID;
126 static const QString ACTOR_ID;
148 static const QString ACTOR_ID;
H A DWeightMatrixIOWorkers.h82 static const QString ACTOR_ID; in Q_DECLARE_METATYPE()
103 static const QString ACTOR_ID; in Q_DECLARE_METATYPE()
168 static const QString ACTOR_ID; in Q_DECLARE_METATYPE()
189 static const QString ACTOR_ID; in Q_DECLARE_METATYPE()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/stringtie/
H A DStringtieGeneAbundanceReportWorkerFactory.cpp42 const QString StringtieGeneAbundanceReportWorkerFactory::ACTOR_ID = "stringtie-gene-abundance-repor… member in U2::LocalWorkflow::StringtieGeneAbundanceReportWorkerFactory
47 : DomainFactory(ACTOR_ID) { in StringtieGeneAbundanceReportWorkerFactory()
70 DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), in init()
98 const Descriptor desc(ACTOR_ID, in init()
117 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
120 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/
H A DDiamondBuildWorkerFactory.cpp44 const QString DiamondBuildWorkerFactory::ACTOR_ID = "diamond-build"; member in U2::LocalWorkflow::DiamondBuildWorkerFactory
52 : DomainFactory(ACTOR_ID) { in DiamondBuildWorkerFactory()
68 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
94 …Descriptor desc(ACTOR_ID, DiamondBuildPrompter::tr("Build DIAMOND Database"), DiamondBuildPrompter… in init()
108 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
111 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
H A DDiamondClassifyWorkerFactory.cpp53 const QString DiamondClassifyWorkerFactory::ACTOR_ID = "diamond-classify"; member in U2::LocalWorkflow::DiamondClassifyWorkerFactory
79 : DomainFactory(ACTOR_ID) { in DiamondClassifyWorkerFactory()
108 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init()
109 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
178 …delegates[DATABASE_ATTR_ID] = new DatabaseDelegate(ACTOR_ID, DATABASE_ATTR_ID, dataPathItems, "dia… in init()
277 const Descriptor desc(ACTOR_ID, in init()
298 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
301 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/sitecon/src/
H A DSiteconIOWorkers.cpp52 const QString SiteconReader::ACTOR_ID("sitecon-read"); member in U2::LocalWorkflow::SiteconReader
53 const QString SiteconWriter::ACTOR_ID("sitecon-write"); member in U2::LocalWorkflow::SiteconWriter
143 …Descriptor desc(SiteconWriter::ACTOR_ID, SiteconIO::tr("Write SITECON Model"), SiteconIO::tr("Save… in init()
167 localDomain->registerEntry(new SiteconWorkerFactory(SiteconReader::ACTOR_ID)); in init()
168 localDomain->registerEntry(new SiteconWorkerFactory(SiteconWriter::ACTOR_ID)); in init()
169 localDomain->registerEntry(new SiteconWorkerFactory(SiteconSearchWorker::ACTOR_ID)); in init()
170 localDomain->registerEntry(new SiteconWorkerFactory(SiteconBuildWorker::ACTOR_ID)); in init()
175 if (SiteconReader::ACTOR_ID == a->getProto()->getId()) { in createWorker()
177 } else if (SiteconWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker()
179 } else if (SiteconBuildWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/
H A DFASTQWorkersLibrary.h62 static const QString ACTOR_ID; variable
67 : DomainFactory(ACTOR_ID) { in CASAVAFilterWorkerFactory()
112 static const QString ACTOR_ID; variable
117 : DomainFactory(ACTOR_ID) { in FastqQualityTrimWorkerFactory()
166 static const QString ACTOR_ID; variable
171 : DomainFactory(ACTOR_ID) { in MergeFastqWorkerFactory()
H A DRemoteDBFetcherWorker.h76 static const QString ACTOR_ID;
86 : DomainFactory(ACTOR_ID) { in RemoteDBFetcherFactory()
129 static const QString ACTOR_ID;
133 : DomainFactory(ACTOR_ID) { in FetchSequenceByIdFromAnnotationFactory()
H A DConvertSnpeffVariationsToAnnotationsWorker.cpp65 const QString ConvertSnpeffVariationsToAnnotationsFactory::ACTOR_ID = "convert-snpeff-variations-to… member in U2::LocalWorkflow::ConvertSnpeffVariationsToAnnotationsFactory
68 : DomainFactory(ACTOR_ID) { in ConvertSnpeffVariationsToAnnotationsFactory()
85 …ports << new PortDescriptor(inDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), true /… in init()
104 Descriptor desc(ACTOR_ID, in init()
H A DWriteVariationWorker.h44 static const QString ACTOR_ID;
47 : DomainFactory(ACTOR_ID) { in WriteVariationWorkerFactory()
H A DReverseComplementWorker.h63 static const QString ACTOR_ID;
66 : DomainFactory(ACTOR_ID) { in RCWorkerFactory()
H A DReadAssemblyWorker.h57 static const QString ACTOR_ID;
60 : DomainFactory(ACTOR_ID) { in ReadAssemblyWorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bedtools/
H A DBedToolsWorkersLibrary.h61 static const QString ACTOR_ID; variable
66 : DomainFactory(ACTOR_ID) { in SlopbedWorkerFactory()
112 static const QString ACTOR_ID; variable
117 : DomainFactory(ACTOR_ID) { in GenomecovWorkerFactory()
163 static const QString ACTOR_ID;
166 : DomainFactory(ACTOR_ID) { in BedtoolsIntersectWorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/wevote_support/src/
H A DWevoteWorkerFactory.cpp49 const QString WevoteWorkerFactory::ACTOR_ID = "wevote-classify"; member in U2::LocalWorkflow::WevoteWorkerFactory
63 : DomainFactory(ACTOR_ID) { in WevoteWorkerFactory()
92 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init()
93 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
155 …Descriptor desc(ACTOR_ID, WevotePrompter::tr("Improve Classification with WEVOTE"), WevotePrompter… in init()
169 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
172 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/
H A DKrakenClassifyWorkerFactory.cpp54 const QString KrakenClassifyWorkerFactory::ACTOR_ID = "kraken-classify"; member in U2::LocalWorkflow::KrakenClassifyWorkerFactory
77 : DomainFactory(ACTOR_ID) { in KrakenClassifyWorkerFactory()
110 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init()
111 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
175 delegates[DATABASE_ATTR_ID] = new DatabaseDelegate(ACTOR_ID, in init()
198 …Descriptor desc(ACTOR_ID, KrakenClassifyPrompter::tr("Classify Sequences with Kraken"), KrakenClas… in init()
213 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
216 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
H A DKrakenBuildWorkerFactory.cpp49 const QString KrakenBuildWorkerFactory::ACTOR_ID = "kraken-build"; member in U2::LocalWorkflow::KrakenBuildWorkerFactory
68 : DomainFactory(ACTOR_ID) { in KrakenBuildWorkerFactory()
84 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
221 …Descriptor desc(ACTOR_ID, KrakenBuildPrompter::tr("Build Kraken Database"), KrakenBuildPrompter::t… in init()
235 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
238 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/
H A DGenomeAlignerIndexWorker.h73 static const QString ACTOR_ID;
76 : DomainFactory(ACTOR_ID) { in GenomeAlignerBuildWorkerFactory()
120 static const QString ACTOR_ID;
123 : DomainFactory(ACTOR_ID) { in GenomeAlignerIndexReaderWorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/trimmomatic/
H A DTrimmomaticWorkerFactory.cpp50 const QString TrimmomaticWorkerFactory::ACTOR_ID = "trimmomatic"; member in U2::LocalWorkflow::TrimmomaticWorkerFactory
77 : DomainFactory(ACTOR_ID) { in TrimmomaticWorkerFactory()
108 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init()
133 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init()
260 const Descriptor desc(ACTOR_ID, in init()
278 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
281 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins/metaphlan2_support/src/
H A DMetaphlan2WorkerFactory.cpp50 const QString Metaphlan2WorkerFactory::ACTOR_ID = "metaphlan2-classify"; member in U2::LocalWorkflow::Metaphlan2WorkerFactory
110 : DomainFactory(ACTOR_ID) { in Metaphlan2WorkerFactory()
138 …ports << new PortDescriptor(inPortDescriptor, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType… in init()
285 …delegates[DB_URL] = new DatabaseDelegate(ACTOR_ID, DB_URL, databaseMap, "metaphlan2/database", tru… in init()
345 const Descriptor actorDescription(ACTOR_ID, in init()
369 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup()
372 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bowtie/
H A DBowtieWorker.h47 static const QString ACTOR_ID;
50 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BowtieWorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bwa/
H A DBwaWorker.h47 static const QString ACTOR_ID;
50 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BwaWorkerFactory()
H A DBwaMemWorker.h48 static const QString ACTOR_ID;
51 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BwaMemWorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bowtie2/
H A DBowtie2Worker.h48 static const QString ACTOR_ID;
51 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in Bowtie2WorkerFactory()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/
H A DTCoffeeWorker.h63 static const QString ACTOR_ID;
66 : DomainFactory(ACTOR_ID) { in TCoffeeWorkerFactory()

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