/dports/biology/ugene/ugene-40.1/src/plugins/weight_matrix/src/ |
H A D | WeightMatrixIOWorkers.cpp | 52 const QString PWMatrixReader::ACTOR_ID("wmatrix-read"); member in U2::LocalWorkflow::PWMatrixReader 53 const QString PWMatrixWriter::ACTOR_ID("wmatrix-write"); member in U2::LocalWorkflow::PWMatrixWriter 54 const QString PFMatrixReader::ACTOR_ID("fmatrix-read"); member in U2::LocalWorkflow::PFMatrixReader 55 const QString PFMatrixWriter::ACTOR_ID("fmatrix-write"); member in U2::LocalWorkflow::PFMatrixWriter 181 if (PWMatrixReader::ACTOR_ID == a->getProto()->getId()) { in createWorker() 183 } else if (PWMatrixWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker() 185 } else if (PWMatrixBuildWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker() 187 } else if (PWMatrixSearchWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker() 403 if (PFMatrixReader::ACTOR_ID == a->getProto()->getId()) { in createWorker() 405 } else if (PFMatrixWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker() [all …]
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H A D | WeightMatrixWorkers.h | 71 static const QString ACTOR_ID; 93 static const QString ACTOR_ID; 126 static const QString ACTOR_ID; 148 static const QString ACTOR_ID;
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H A D | WeightMatrixIOWorkers.h | 82 static const QString ACTOR_ID; in Q_DECLARE_METATYPE() 103 static const QString ACTOR_ID; in Q_DECLARE_METATYPE() 168 static const QString ACTOR_ID; in Q_DECLARE_METATYPE() 189 static const QString ACTOR_ID; in Q_DECLARE_METATYPE()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/stringtie/ |
H A D | StringtieGeneAbundanceReportWorkerFactory.cpp | 42 const QString StringtieGeneAbundanceReportWorkerFactory::ACTOR_ID = "stringtie-gene-abundance-repor… member in U2::LocalWorkflow::StringtieGeneAbundanceReportWorkerFactory 47 : DomainFactory(ACTOR_ID) { in StringtieGeneAbundanceReportWorkerFactory() 70 DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), in init() 98 const Descriptor desc(ACTOR_ID, in init() 117 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 120 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/ |
H A D | DiamondBuildWorkerFactory.cpp | 44 const QString DiamondBuildWorkerFactory::ACTOR_ID = "diamond-build"; member in U2::LocalWorkflow::DiamondBuildWorkerFactory 52 : DomainFactory(ACTOR_ID) { in DiamondBuildWorkerFactory() 68 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 94 …Descriptor desc(ACTOR_ID, DiamondBuildPrompter::tr("Build DIAMOND Database"), DiamondBuildPrompter… in init() 108 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 111 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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H A D | DiamondClassifyWorkerFactory.cpp | 53 const QString DiamondClassifyWorkerFactory::ACTOR_ID = "diamond-classify"; member in U2::LocalWorkflow::DiamondClassifyWorkerFactory 79 : DomainFactory(ACTOR_ID) { in DiamondClassifyWorkerFactory() 108 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init() 109 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 178 …delegates[DATABASE_ATTR_ID] = new DatabaseDelegate(ACTOR_ID, DATABASE_ATTR_ID, dataPathItems, "dia… in init() 277 const Descriptor desc(ACTOR_ID, in init() 298 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 301 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/sitecon/src/ |
H A D | SiteconIOWorkers.cpp | 52 const QString SiteconReader::ACTOR_ID("sitecon-read"); member in U2::LocalWorkflow::SiteconReader 53 const QString SiteconWriter::ACTOR_ID("sitecon-write"); member in U2::LocalWorkflow::SiteconWriter 143 …Descriptor desc(SiteconWriter::ACTOR_ID, SiteconIO::tr("Write SITECON Model"), SiteconIO::tr("Save… in init() 167 localDomain->registerEntry(new SiteconWorkerFactory(SiteconReader::ACTOR_ID)); in init() 168 localDomain->registerEntry(new SiteconWorkerFactory(SiteconWriter::ACTOR_ID)); in init() 169 localDomain->registerEntry(new SiteconWorkerFactory(SiteconSearchWorker::ACTOR_ID)); in init() 170 localDomain->registerEntry(new SiteconWorkerFactory(SiteconBuildWorker::ACTOR_ID)); in init() 175 if (SiteconReader::ACTOR_ID == a->getProto()->getId()) { in createWorker() 177 } else if (SiteconWriter::ACTOR_ID == a->getProto()->getId()) { in createWorker() 179 } else if (SiteconBuildWorker::ACTOR_ID == a->getProto()->getId()) { in createWorker() [all …]
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/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
H A D | FASTQWorkersLibrary.h | 62 static const QString ACTOR_ID; variable 67 : DomainFactory(ACTOR_ID) { in CASAVAFilterWorkerFactory() 112 static const QString ACTOR_ID; variable 117 : DomainFactory(ACTOR_ID) { in FastqQualityTrimWorkerFactory() 166 static const QString ACTOR_ID; variable 171 : DomainFactory(ACTOR_ID) { in MergeFastqWorkerFactory()
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H A D | RemoteDBFetcherWorker.h | 76 static const QString ACTOR_ID; 86 : DomainFactory(ACTOR_ID) { in RemoteDBFetcherFactory() 129 static const QString ACTOR_ID; 133 : DomainFactory(ACTOR_ID) { in FetchSequenceByIdFromAnnotationFactory()
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H A D | ConvertSnpeffVariationsToAnnotationsWorker.cpp | 65 const QString ConvertSnpeffVariationsToAnnotationsFactory::ACTOR_ID = "convert-snpeff-variations-to… member in U2::LocalWorkflow::ConvertSnpeffVariationsToAnnotationsFactory 68 : DomainFactory(ACTOR_ID) { in ConvertSnpeffVariationsToAnnotationsFactory() 85 …ports << new PortDescriptor(inDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), true /… in init() 104 Descriptor desc(ACTOR_ID, in init()
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H A D | WriteVariationWorker.h | 44 static const QString ACTOR_ID; 47 : DomainFactory(ACTOR_ID) { in WriteVariationWorkerFactory()
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H A D | ReverseComplementWorker.h | 63 static const QString ACTOR_ID; 66 : DomainFactory(ACTOR_ID) { in RCWorkerFactory()
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H A D | ReadAssemblyWorker.h | 57 static const QString ACTOR_ID; 60 : DomainFactory(ACTOR_ID) { in ReadAssemblyWorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bedtools/ |
H A D | BedToolsWorkersLibrary.h | 61 static const QString ACTOR_ID; variable 66 : DomainFactory(ACTOR_ID) { in SlopbedWorkerFactory() 112 static const QString ACTOR_ID; variable 117 : DomainFactory(ACTOR_ID) { in GenomecovWorkerFactory() 163 static const QString ACTOR_ID; 166 : DomainFactory(ACTOR_ID) { in BedtoolsIntersectWorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/wevote_support/src/ |
H A D | WevoteWorkerFactory.cpp | 49 const QString WevoteWorkerFactory::ACTOR_ID = "wevote-classify"; member in U2::LocalWorkflow::WevoteWorkerFactory 63 : DomainFactory(ACTOR_ID) { in WevoteWorkerFactory() 92 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init() 93 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 155 …Descriptor desc(ACTOR_ID, WevotePrompter::tr("Improve Classification with WEVOTE"), WevotePrompter… in init() 169 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 172 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/ |
H A D | KrakenClassifyWorkerFactory.cpp | 54 const QString KrakenClassifyWorkerFactory::ACTOR_ID = "kraken-classify"; member in U2::LocalWorkflow::KrakenClassifyWorkerFactory 77 : DomainFactory(ACTOR_ID) { in KrakenClassifyWorkerFactory() 110 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init() 111 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 175 delegates[DATABASE_ATTR_ID] = new DatabaseDelegate(ACTOR_ID, in init() 198 …Descriptor desc(ACTOR_ID, KrakenClassifyPrompter::tr("Classify Sequences with Kraken"), KrakenClas… in init() 213 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 216 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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H A D | KrakenBuildWorkerFactory.cpp | 49 const QString KrakenBuildWorkerFactory::ACTOR_ID = "kraken-build"; member in U2::LocalWorkflow::KrakenBuildWorkerFactory 68 : DomainFactory(ACTOR_ID) { in KrakenBuildWorkerFactory() 84 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 221 …Descriptor desc(ACTOR_ID, KrakenBuildPrompter::tr("Build Kraken Database"), KrakenBuildPrompter::t… in init() 235 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 238 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/ |
H A D | GenomeAlignerIndexWorker.h | 73 static const QString ACTOR_ID; 76 : DomainFactory(ACTOR_ID) { in GenomeAlignerBuildWorkerFactory() 120 static const QString ACTOR_ID; 123 : DomainFactory(ACTOR_ID) { in GenomeAlignerIndexReaderWorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/trimmomatic/ |
H A D | TrimmomaticWorkerFactory.cpp | 50 const QString TrimmomaticWorkerFactory::ACTOR_ID = "trimmomatic"; member in U2::LocalWorkflow::TrimmomaticWorkerFactory 77 : DomainFactory(ACTOR_ID) { in TrimmomaticWorkerFactory() 108 …ports << new PortDescriptor(inPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType)), tr… in init() 133 …ports << new PortDescriptor(outPortDesc, DataTypePtr(new MapDataType(ACTOR_ID + "-out", outType)),… in init() 260 const Descriptor desc(ACTOR_ID, in init() 278 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 281 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins/metaphlan2_support/src/ |
H A D | Metaphlan2WorkerFactory.cpp | 50 const QString Metaphlan2WorkerFactory::ACTOR_ID = "metaphlan2-classify"; member in U2::LocalWorkflow::Metaphlan2WorkerFactory 110 : DomainFactory(ACTOR_ID) { in Metaphlan2WorkerFactory() 138 …ports << new PortDescriptor(inPortDescriptor, DataTypePtr(new MapDataType(ACTOR_ID + "-in", inType… in init() 285 …delegates[DB_URL] = new DatabaseDelegate(ACTOR_ID, DB_URL, databaseMap, "metaphlan2/database", tru… in init() 345 const Descriptor actorDescription(ACTOR_ID, in init() 369 delete WorkflowEnv::getProtoRegistry()->unregisterProto(ACTOR_ID); in cleanup() 372 delete localDomain->unregisterEntry(ACTOR_ID); in cleanup()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bowtie/ |
H A D | BowtieWorker.h | 47 static const QString ACTOR_ID; 50 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BowtieWorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bwa/ |
H A D | BwaWorker.h | 47 static const QString ACTOR_ID; 50 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BwaWorkerFactory()
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H A D | BwaMemWorker.h | 48 static const QString ACTOR_ID; 51 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in BwaMemWorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bowtie2/ |
H A D | Bowtie2Worker.h | 48 static const QString ACTOR_ID; 51 : BaseShortReadsAlignerWorkerFactory(ACTOR_ID) { in Bowtie2WorkerFactory()
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/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/ |
H A D | TCoffeeWorker.h | 63 static const QString ACTOR_ID; 66 : DomainFactory(ACTOR_ID) { in TCoffeeWorkerFactory()
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