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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c4785 criteria[ACvsBD] = d[qAC] + d[qBD] + penalty[ACvsBD]; in ChooseNNI()
4789 if (criteria[ACvsBD] < criteria[ABvsCD] && criteria[ACvsBD] <= criteria[ADvsBC]) { in ChooseNNI()
4790 choice = ACvsBD; in ChooseNNI()
4797 criteria[ABvsCD], choice == ACvsBD ? criteria[ACvsBD] : criteria[ADvsBC]); in ChooseNNI()
5652 criteria[ACvsBD] = -1e20; in MLQuartetNNI()
5663 - penalty[ACvsBD]; in MLQuartetNNI()
5704 if (criteria[ACvsBD] > criteria[ABvsCD] && criteria[ACvsBD] > criteria[ADvsBC]) { in MLQuartetNNI()
5706 return(ACvsBD); in MLQuartetNNI()
6416 if (choice == ACvsBD) { in NNI()
7202 else if (loglk[ACvsBD] >= loglk[ABvsCD] && loglk[ACvsBD] >= loglk[ADvsBC]) in TestSplitsML()
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