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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c4158 piece[ADvsBC] = constraintWeight in QuartetConstraintPenaltiesPiece()
4786 criteria[ADvsBC] = d[qAD] + d[qBC] + penalty[ADvsBC]; in ChooseNNI()
4791 } else if (criteria[ADvsBC] < criteria[ABvsCD] && criteria[ADvsBC] <= criteria[ACvsBD]) { in ChooseNNI()
4792 choice = ADvsBC; in ChooseNNI()
5653 criteria[ADvsBC] = -1e20; in MLQuartetNNI()
5674 - penalty[ADvsBC]; in MLQuartetNNI()
5707 } else if (criteria[ADvsBC] > criteria[ABvsCD] && criteria[ADvsBC] > criteria[ACvsBD]) { in MLQuartetNNI()
5709 return(ADvsBC); in MLQuartetNNI()
6420 } else if (choice == ADvsBC) { in NNI()
6431 if (choice == ADvsBC) { in NNI()
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