AGA (reference) in projects: dports - OpenGrok search results

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Searched refs:AGA (Results 1 – 25 of 933) sorted by relevance

12 3 4 5 6 7 8 9 10 >>...38

/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/
H A D	out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 15 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 16 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 27 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 78 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 81 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 133 …AGA AGA --- --- TAT --- AGA --- AGA AGA --- AGG CGA --- --- AGA GTG --- AGA AGA AGA AGA AGG AGC AG… [all …]
H A D	lnf	17 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 18 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 19 …AGA (R) GTG (V) AGG (R) --- (-) AGG (R) --- (-) --- (-) GTG (V) AGA (R) --- (-) --- (-) ATG (M) --… 21 …AGA (R) AGA (R) AGA (R) TGC (C) AGA (R) AGA (R) AGA (R) --- (-) CAC (H) TAC (Y) TAC (Y) TAC (Y) AG… 27 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 28 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 29 …AGA (R) AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) AGG (R) AGG (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 31 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- (-) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/
H A D	M1.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/
H A D	M2.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/
H A D	M7.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/
H A D	M8.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/
H A D	fb.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/protamine/PRM1/slr/
H A D	fb.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/M0/
H A D	out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 15 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 16 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 27 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 78 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 81 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 133 …AGA AGA --- --- TAT --- AGA --- AGA AGA --- AGG CGA --- --- AGA GTG --- AGA AGA AGA AGA AGG AGC AG… [all …]
H A D	lnf	17 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 18 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 19 …AGA (R) GTG (V) AGG (R) --- (-) AGG (R) --- (-) --- (-) GTG (V) AGA (R) --- (-) --- (-) ATG (M) --… 21 …AGA (R) AGA (R) AGA (R) TGC (C) AGA (R) AGA (R) AGA (R) --- (-) CAC (H) TAC (Y) TAC (Y) TAC (Y) AG… 27 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 28 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 29 …AGA (R) AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) AGG (R) AGG (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 31 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- (-) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/M1/
H A D	M1.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/M2/
H A D	M2.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/M7/
H A D	M7.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
H A D	lnf	8 …AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 10 …AGA (R) GCT (A) CGC (R) AGA (R) AGA (R) ATA (I) AGA (R) AGA (R) --- () AGA (R) AGA (R) AGA (R) AG… 21 …AGA (R) AGA (R) CGC (R) AGA (R) AGG (R) AGA (R) AGA (R) AGG (R) AGA (R) AGG (R) AGA (R) AGA (R) AG… 30 …AGA (R) CGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AG… 32 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGT (S) AGA (R) AGA (R) CGA (R) AGA (R) AGA (R) AGA (R) AG… 36 …AGA (R) AGA (R) AGG (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… 47 …AGA (R) AGA (R) AGA (R) GTC (V) AGG (R) CGG (R) AGG (R) CGG (R) AGA (R) AAG (K) AGA (R) AGA (R) AG… 49 …AGA (R) GTG (V) AGG (R) --- () AGG (R) --- () --- () GTG (V) AGA (R) --- () --- () --- (*) AT… 64 …AGA (R) CGC (R) AGA (R) AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGG (R) AGG (R) AGA (R) AGA (R) AG… 65 …AGA (R) CGG (R) CGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/M8/
H A D	M8.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/paml/fb/
H A D	fb.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/protamine/PRM1/slr/
H A D	fb.out	6 …AGA TGC CGC CGC CAC CGG AGA --- --- --- CGA CGC AGA TGC TCC --- AGA CGA AGG AGG CGA TCT GGT CGG AG… 16 …AGA TAC AGA TGC TGC CGT AGC CGA --- --- AGC CGG AGC AGA TGC --- --- CGC CCT CGG --- --- --- AGA CG… 17 …AGA TAC AGA TGT TGC CGC AGC CAA --- --- AGC CGG AGC AGA TGC --- --- CGC CGT CGG --- --- --- AGA CG… 29 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- --- AGG CA… 61 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 62 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 63 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 79 …AGA TAC AGA CGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGA --- --- --- AGA AG… 82 …AGA TAC AGA TGC TGC CGC --- --- --- --- AGC CGG AGC AGA TGC --- --- CGC CGC CGG --- --- --- AGA AG… 135 …AGA TAC AGC TGC TGC CGC AGC CAC --- --- AGC CGG AGC AGA AGC --- --- CGC CGT CGG --- --- AGG CAA AG… [all …]

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