| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajmatrices.c | 76 AJCNEW0(ret->Codes, n); in ajMatrixNew()
86 AJCNEW0(ret->Matrix, nsize); in ajMatrixNew()
89 AJCNEW0(ret->Matrix[i], nsize); in ajMatrixNew()
140 AJCNEW0(ret->Codes, n); in ajMatrixNewAsym()
149 AJCNEW0(ret->CodesRow, rn); in ajMatrixNewAsym()
161 AJCNEW0(ret->Matrix[i], nsize); in ajMatrixNewAsym()
205 AJCNEW0(ret->Codes, n); in ajMatrixfNew()
268 AJCNEW0(ret->Codes, n); in ajMatrixfNewAsym()
279 AJCNEW0(ret->CodesRow, rn); in ajMatrixfNewAsym()
506 AJCNEW0(orderstring, cols); in ajMatrixNewFile()
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| H A D | ajpdbio.c | 2409 AJCNEW0(pdbfile->x, nlines); in pdbioPdbfileNew()
2410 AJCNEW0(pdbfile->y, nlines); in pdbioPdbfileNew()
2411 AJCNEW0(pdbfile->z, nlines); in pdbioPdbfileNew()
2412 AJCNEW0(pdbfile->o, nlines); in pdbioPdbfileNew()
2413 AJCNEW0(pdbfile->b, nlines); in pdbioPdbfileNew()
3562 AJCNEW0(htype, pdbfile->nchains); in pdbioNumberChains()
5052 AJCNEW0(seq1, pdbfile->nchains); in pdbioAlignNumbering()
5053 AJCNEW0(seq2, pdbfile->nchains); in pdbioAlignNumbering()
5056 AJCNEW0(num1, pdbfile->nchains); in pdbioAlignNumbering()
5057 AJCNEW0(num2, pdbfile->nchains); in pdbioAlignNumbering()
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| H A D | ajphylo.c | 926 AJCNEW0(ret->Names,count); in ajPhyloFreqRead()
927 AJCNEW0(ret->Allele,len); in ajPhyloFreqRead()
974 AJCNEW0(ret->Locus,nfreq); in ajPhyloFreqRead()
982 AJCNEW0(ret->Data,ncells); in ajPhyloFreqRead()
1000 AJCNEW0(ret->Data,ncells); in ajPhyloFreqRead()
1001 AJCNEW0(ret->Locus,nfreq); in ajPhyloFreqRead()
1013 AJCNEW0(pvals, count); in ajPhyloFreqRead()
1072 AJCNEW0(ret->Data, totfreq); in ajPhyloFreqRead()
1444 AJCNEW0(ret->Str, 2); in ajPhyloPropRead()
1658 AJCNEW0(state->Names,size); in ajPhyloStateRead()
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| H A D | ajcigar.c | 152 AJCNEW0(c->cigoperator, n); in ajCigarNewS()
153 AJCNEW0(c->length, n); in ajCigarNewS()
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| H A D | ajcod.c | 278 AJCNEW0(thys->aa, AJCODSIZE); in ajCodNew()
279 AJCNEW0(thys->num, AJCODSIZE); in ajCodNew()
323 AJCNEW0(thys->aa, AJCODSIZE); in ajCodNewCodenum()
324 AJCNEW0(thys->num, AJCODSIZE); in ajCodNewCodenum()
3201 AJCNEW0(wk,AJCODSTART); in codGetWstat()
3450 AJCNEW0(df, AJCODAMINOS); in ajCodCalcNc()
3451 AJCNEW0(n, AJCODAMINOS); in ajCodCalcNc()
3468 AJCNEW0(Fbar, max); in ajCodCalcNc()
3469 AJCNEW0(nt, max); in ajCodCalcNc()
3470 AJCNEW0(F, AJCODAMINOS); in ajCodCalcNc()
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| H A D | ajarr.c | 2822 AJCNEW0(array[i],d2); in ajInt2dInt()
3175 AJCNEW0(array,d1); in ajInt3dInt()
3178 AJCNEW0(array[i],d2); in ajInt3dInt()
3566 AJCNEW0(array[i],d2); in ajUint2dUint()
3917 AJCNEW0(array,d1); in ajUint3dUint()
3921 AJCNEW0(array[i],d2); in ajUint3dUint()
4263 AJCNEW0(array[i],d2); in ajFloat2dFloat()
4612 AJCNEW0(array,d1); in ajFloat3dFloat()
4615 AJCNEW0(array[i],d2); in ajFloat3dFloat()
4959 AJCNEW0(array[i],d2); in ajDouble2dDouble()
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| H A D | ajreg.c | 92 AJCNEW0(ret->ovector, AJREG_OVECSIZE); in ajRegCompC()
155 AJCNEW0(ret->ovector, AJREG_OVECSIZE); in ajRegCompCaseC()
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| H A D | ajalign.c | 1016 AJCNEW0(ipos, nseq); in alignWriteMark()
1017 AJCNEW0(incs, nseq); in alignWriteMark()
1018 AJCNEW0(num, nseq); in alignWriteMark()
1478 AJCNEW0(ipos, nseq); in alignWriteSimple()
1479 AJCNEW0(incs, nseq); in alignWriteSimple()
1937 AJCNEW0(ipos, nseq); in alignWriteSrsAny()
1938 AJCNEW0(incs, nseq); in alignWriteSrsAny()
4419 AJCNEW0(data->End, nseqs); in alignDataNew()
4420 AJCNEW0(data->Len, nseqs); in alignDataNew()
4424 AJCNEW0(data->Rev, nseqs); in alignDataNew()
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | tmap.c | 254 AJCNEW0(s, glnr); in main()
258 AJCNEW0(s[i], glposs+1); in main()
262 AJCNEW0(relc, glposs+1); in main()
263 AJCNEW0(reln, glposs+1); in main()
264 AJCNEW0(ali_ok, glposs+1); in main()
265 AJCNEW0(glnpos, glposs+1); in main()
266 AJCNEW0(glcpos, glposs+1); in main()
303 AJCNEW0(tm_segment[i], 2); in main()
648 AJCNEW0(start, glposs+1); in tmap_pred1()
1214 AJCNEW0(skillnad, nr+1); in tmap_weights()
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| H A D | lindna.c | 260 AJCNEW0(Colour, maxgroups); in main()
261 AJCNEW0(Adjust, maxgroups); in main()
265 AJCNEW0(TextOri, maxgroups); in main()
266 AJCNEW0(From, maxgroups); in main()
267 AJCNEW0(To, maxgroups); in main()
269 AJCNEW0(Style, maxgroups); in main()
270 AJCNEW0(Name, maxgroups); in main()
356 AJCNEW0(From[i], maxlabels); in main()
357 AJCNEW0(To[i], maxlabels); in main()
358 AJCNEW0(Style[i], maxlabels); in main()
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| H A D | banana.c | 121 AJCNEW0(iseq,ilen+1); in main()
122 AJCNEW0(x,ilen+1); in main()
123 AJCNEW0(y,ilen+1); in main()
124 AJCNEW0(xave,ilen+1); in main()
125 AJCNEW0(yave,ilen+1); in main()
126 AJCNEW0(curve,ilen+1); in main()
127 AJCNEW0(bend,ilen+1); in main()
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| H A D | needle.c | 98 AJCNEW0(compass, maxarr); in main()
99 AJCNEW0(m, maxarr); in main()
100 AJCNEW0(ix, maxarr); in main()
101 AJCNEW0(iy, maxarr); in main()
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| H A D | needleall.c | 107 AJCNEW0(compass, maxarr); in main()
108 AJCNEW0(m, maxarr); in main()
109 AJCNEW0(ix, maxarr); in main()
110 AJCNEW0(iy, maxarr); in main()
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| H A D | density.c | 163 AJCNEW0(density->pos,limit); in main()
164 AJCNEW0(density->a,limit); in main()
165 AJCNEW0(density->c,limit); in main()
166 AJCNEW0(density->g,limit); in main()
167 AJCNEW0(density->t,limit); in main()
168 AJCNEW0(density->at,limit); in main()
169 AJCNEW0(density->gc,limit); in main()
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| H A D | wordmatch.c | 100 AJCNEW0(matchlist, seqsetsize); in main()
101 AJCNEW0(seqsetftables, seqsetsize); in main()
102 AJCNEW0(nmatchesseqset, seqsetsize); in main()
127 AJCNEW0(lastlocation, seqsetsize); in main()
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| H A D | cirdna.c | 284 AJCNEW0(Style, maxgroups); in main()
285 AJCNEW0(Name, maxgroups); in main()
288 AJCNEW0(Colour, maxgroups); in main()
289 AJCNEW0(Adjust, maxgroups); in main()
293 AJCNEW0(From, maxgroups); in main()
294 AJCNEW0(To, maxgroups); in main()
356 AJCNEW0(Style[i], maxlabels); in main()
357 AJCNEW0(Name[i], maxlabels); in main()
359 AJCNEW0(Colour[i], maxlabels); in main()
363 AJCNEW0(From[i], maxlabels); in main()
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| H A D | supermatcher.c | 145 AJCNEW0(matchlist, ntargetseqs); in main()
155 AJCNEW0(lastlocation, ntargetseqs); in main()
225 AJCNEW0(path,newmax); in main()
227 AJCNEW0(compass,newmax); in main()
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| H A D | prophecy.c | 166 AJCNEW0(matrix[i], mlen); in prophecy_simple_matrix()
351 AJCNEW0(weights[i], GRIBSKOV_LENGTH+1); in prophecy_gribskov_profile()
391 AJCNEW0(mat[i],GRIBSKOV_LENGTH); in prophecy_gribskov_profile()
577 AJCNEW0(weights[i],HENIKOFF_LENGTH+1); in prophecy_henikoff_profile()
610 AJCNEW0(pcnt, mlen); in prophecy_henikoff_profile()
627 AJCNEW0(mat[i],HENIKOFF_LENGTH); in prophecy_henikoff_profile()
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| H A D | hmoment.c | 111 AJCNEW0(x,limit); in main()
112 AJCNEW0(ya,limit); in main()
113 AJCNEW0(yb,limit); in main()
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| H A D | charge.c | 123 AJCNEW0(x,limit); in main()
124 AJCNEW0(y,limit); in main()
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| H A D | etandem.c | 115 AJCNEW0(res->max, nmax+1); in etandem_consCreate()
116 AJCNEW0(res->bestMax, nmax+1); in etandem_consCreate()
117 AJCNEW0(res->tab, 5*nmax+5); in etandem_consCreate()
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| H A D | infoassembly.c | 272 AJCNEW0(stats->contigstats, stats->nContigs); in main()
275 AJCNEW0(gc, stats->nContigs); in main()
293 AJCNEW0(stats->contigstats[i]->rdepth, c->Length+1); /* 1-based coord*/ in main()
783 AJCNEW0(gc, refLength + 1); in infoassembly_calculateAllGcs()
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| H A D | dbxreport.c | 197 AJCNEW0(dbxdata, nindex); in main()
296 AJCNEW0(dbxdata[i].refs,pagecount); in main()
297 AJCNEW0(pagepos,pagecount); in main()
298 AJCNEW0(pageindex,pagecount); in main()
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| H A D | dbifasta.c | 197 AJCNEW0(countField, nfields); in main()
198 AJCNEW0(fieldTot, nfields); in main()
239 AJCNEW0(divfiles, nfiles); in main()
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| H A D | mwcontam.c | 123 AJCNEW0(*lists,nfiles); in mwcontam_readdata()
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