Searched refs:AMINOACID_TYPE_VAL (Results 1 – 6 of 6) sorted by relevance
326 static final String AMINOACID_TYPE_VAL ="aminoAcid"; field in XmlDeclarations
38 AMINOACID_TYPE_VAL.equals(type); in isBiochemical()
528 if (AMINOACID_TYPE_VAL.equals(atomList.get(0).getFrag().getType())) { in applyUnlocantedChargeModification()
1647 …ools.getDescendantElementsWithTagNameAndAttribute(peptide, GROUP_EL, TYPE_ATR, AMINOACID_TYPE_VAL); in buildCyclicPeptide()2247 else if (AMINOACID_TYPE_VAL.equals(group.getAttributeValue(TYPE_ATR))) { in processSpecialCases()
2683 else if (ENDINIC_SUBTYPE_VAL.equals(groupSubType) && AMINOACID_TYPE_VAL.equals(groupType)) { in handleGroupIrregularities()2771 if (AMINOACID_TYPE_VAL.equals(groupType)) { in handleGroupIrregularities()
1267 if (AMINOACID_TYPE_VAL.equals(type)) { in applyDLPrefixes()4058 …if (group.getAttributeValue(TYPE_ATR).equals(AMINOACID_TYPE_VAL) && OpsinTools.getNextGroup(group)… in addImplicitBracketsToAminoAcids()