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Searched refs:AMINOACID_TYPE_VAL (Results 1 – 6 of 6) sorted by relevance

/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/
H A DXmlDeclarations.java326 static final String AMINOACID_TYPE_VAL ="aminoAcid"; field in XmlDeclarations
H A DOpsinTools.java38 AMINOACID_TYPE_VAL.equals(type); in isBiochemical()
H A DSuffixApplier.java528 if (AMINOACID_TYPE_VAL.equals(atomList.get(0).getFrag().getType())) { in applyUnlocantedChargeModification()
H A DStructureBuilder.java1647 …ools.getDescendantElementsWithTagNameAndAttribute(peptide, GROUP_EL, TYPE_ATR, AMINOACID_TYPE_VAL); in buildCyclicPeptide()
2247 else if (AMINOACID_TYPE_VAL.equals(group.getAttributeValue(TYPE_ATR))) { in processSpecialCases()
H A DComponentGenerator.java2683 else if (ENDINIC_SUBTYPE_VAL.equals(groupSubType) && AMINOACID_TYPE_VAL.equals(groupType)) { in handleGroupIrregularities()
2771 if (AMINOACID_TYPE_VAL.equals(groupType)) { in handleGroupIrregularities()
H A DComponentProcessor.java1267 if (AMINOACID_TYPE_VAL.equals(type)) { in applyDLPrefixes()
4058 …if (group.getAttributeValue(TYPE_ATR).equals(AMINOACID_TYPE_VAL) && OpsinTools.getNextGroup(group)… in addImplicitBracketsToAminoAcids()