Searched refs:A_End (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/canu/canu-2.2/src/overlapInCore/liboverlap/ |
| H A D | prefixEditDistance-forward.C | 97 int32 &A_End, in forward() argument
126 A_End = T_End = m; in forward()
202 A_End = Max_Score_Len; in forward()
223 A_End = Row; // One past last align position in forward()
306 A_End = Max_Score_Len; in forward()
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| H A D | prefixEditDistance-reverse.C | 117 int32 &A_End, in reverse() argument
147 A_End = T_End = - m; in reverse()
225 A_End = - Max_Score_Len; in reverse()
238 A_End = - Row; // One past last align position in reverse()
322 A_End = - Max_Score_Len; in reverse()
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| H A D | prefixEditDistance.H | 78 int32 &A_End,
87 int32 &A_End,
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| /dports/biology/canu/canu-2.2/src/overlapErrorAdjustment/ |
| H A D | correctOverlaps-Prefix_Edit_Distance.C | 161 int32 &A_End, in Prefix_Edit_Dist() argument
189 A_End = Row; in Prefix_Edit_Dist()
240 A_End = Row; // One past last align position in Prefix_Edit_Dist()
296 A_End = Max_Score_Len; in Prefix_Edit_Dist()
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| H A D | findErrors-Prefix_Edit_Distance.C | 166 int32 &A_End, in Prefix_Edit_Dist() argument
192 A_End = Row; in Prefix_Edit_Dist()
239 A_End = Row; // One past last align position in Prefix_Edit_Dist()
297 A_End = Max_Score_Len; in Prefix_Edit_Dist()
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| H A D | findErrors-Process_Olap.C | 120 int32 &A_End,
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| H A D | correctOverlaps-Redo_Olaps.C | 41 int32 &A_End,
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| /dports/biology/canu/canu-2.2/src/utgcns/libNDalign/ |
| H A D | NDalgorithm-forward.C | 101 int32 &A_End, in forward() argument
138 A_End = Alen; in forward()
272 A_End = Row; // One past last align position in forward()
324 A_End = Max_Score_Len; in forward()
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| H A D | NDalgorithm-reverse.C | 98 int32 &A_End, in reverse() argument
135 A_End = -Alen; in reverse()
271 A_End = - Row; // One past last align position in reverse()
323 A_End = - Max_Score_Len; in reverse()
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| H A D | NDalgorithm.H | 112 int32 &A_End,
122 int32 &A_End,
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/tigr/ |
| H A D | combineMUMs.cc | 191 int * A_End, int * T_End, int * Match_To_End,
201 int * A_End, int * T_End, int * Match_To_End,
1277 int * A_End, int * T_End, int * Match_To_End, in Prefix_Edit_Dist() argument
1359 (* A_End) = (* T_End) = Row; in Prefix_Edit_Dist()
1407 (* A_End) = Max_Score_Len; in Prefix_Edit_Dist()
1416 (* A_End) = Row; // One past last align position in Prefix_Edit_Dist()
1456 (* A_End) = Max_Score_Len; in Prefix_Edit_Dist()
1648 int * A_End, int * T_End, int * Match_To_End, in Rev_Prefix_Edit_Dist() argument
1731 (* A_End) = (* T_End) = Row; in Rev_Prefix_Edit_Dist()
1779 (* A_End) = Max_Score_Len; in Rev_Prefix_Edit_Dist()
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