Searched refs:AalignLen (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/canu/canu-2.2/src/overlapCheck/ |
| H A D | overlapCheck.C | 87 const char *Aalign, uint32 AalignLen, in evaluateKmers() argument
93 kmerIterator Ait(Aalign, AalignLen); in evaluateKmers()
144 char const *Aalign, uint32 AalignLen, uint32 abgn, uint32 aend, in dumpKmers() argument
166 kmerIterator Ait(Aalign, AalignLen); in dumpKmers()
218 uint32 AalignLen = 0; char *Aalign = nullptr; in compareOverlapKmers() local
242 AalignLen = res.alignmentLength + 1; Aalign = new char [AalignLen]; in compareOverlapKmers()
265 Aalign, AalignLen, in compareOverlapKmers()
273 findReadKmers(Aalign, AalignLen, 0, AalignLen, Ain, Aall); in compareOverlapKmers()
310 Aalign, AalignLen, abgn, aend, in compareOverlapKmers()
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| /dports/biology/canu/canu-2.2/src/gfa/ |
| H A D | alignGFA.C | 171 int32 AalignLen = 0; in checkLink() local
180 link->alignmentLength(AalignLen, BalignLen, alignLen); in checkLink()
201 Abgn = std::max(Alen - AalignLen, 0); in checkLink()
214 AalignLen, BalignLen, alignLen); in checkLink()
246 …Abgn = std::max(Alen - (int32)(1.10 * ratio * AalignLen), 0); // Expand by whatever factor the c… in checkLink()
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